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AT5G54910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1507-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0343EMBL:AB005232EMBL:CP002688EnsemblPlants:AT5G54910
EnsemblPlants:AT5G54910.1entrez:835582Gene3D:3.40.50.300GeneID:835582Genevisible:Q9FFT9GO:GO:0003723GO:GO:0004386
GO:GO:0005524GO:GO:0005730Gramene:AT5G54910.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF54HOGENOM:HOG000268801InParanoid:Q9FFT9
InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR025313InterPro:IPR027417
iPTMnet:Q9FFT9KEGG:ath:AT5G54910KO:K14776ncoils:CoilOMA:KISQRYAPaxDb:Q9FFT9Pfam:PF00270
Pfam:PF00271Pfam:PF13959Pfam:Q9FFT9Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9FFT9
PRIDE:Q9FFT9PRO:PR:Q9FFT9PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9FFT9
Proteomes:UP000006548RefSeq:NP_200302.1scanprosite:PS00039SMART:SM00487SMART:SM00490SMART:SM01178SMR:Q9FFT9
STRING:3702.AT5G54910.1SUPFAM:SSF52540TAIR:AT5G54910UniGene:At.29471UniProt:Q9FFT9
Coordinates (TAIR10) chr5:-:22298668..22301719
Molecular Weight (calculated) 83586.30 Da
IEP (calculated) 9.70
GRAVY (calculated) -0.50
Length 739 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKIKKTKGM RKQIRLNEVE EINLLKQWIE SQKPDSGFNP LSLRPLPKDS KIGKSEDGKN GTVFSRYAGV RKFAQLPISD KTKRGLKDAK YVDMTDVQSA
101: AIPHALCGRD ILGAARTGSG KTLAFVIPIL EKLHRERWSP EDGVGCIIIS PTRELAAQTF GVLNKVGKFH KFSAGLLIGG REGVDVEKER VHEMNILVCA
201: PGRLLQHMDE TPNFECPQLQ ILILDEADRV LDSAFKGQLD PIISQLPKHR QTLLFSATQT KKVKDLARLS LRDPEYISVH AEAVTATPTS LMQTVMIVPV
301: EKKLDMLWSF IKTHLNSRIL VFLSTKKQVK FVHEAFNKLR PGIPLKSLHG KMSQEKRMGV YSQFIERQSV LFCTDVLARG LDFDKAVDWV VQVDCPEDVA
401: SYIHRVGRTA RFYTQGKSLL FLTPSEEKMI EKLQEAKVPI KLIKANNQKL QEVSRLLAAL LVKYPDLQGV AQRAFITYLR SIHKRRDKEI FDVSKLSIEN
501: FSASLGLPMT PRIRFTNLKT KKKGVYESSI AMEIENAQEY EAPLVVKKDL LGEDLEEEDF ALKPRKEGKV VEKSTKEEEV LIPGNRVLKN KKLKINLHRP
601: FGSRVVLDEE GNSLAPLASV AAEAGTEVAL DEERMNDYYK KVGAEMRKAD IEDKKVDKER RREKRMKQKI KRKRGAMEDE EEEEEEDHDG SGSSDDETGR
701: NSKRAKKIVS DNEENGGKIN TDSLSVADLE EMALKFITQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)