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AT5G52380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VASCULAR-RELATED NAC-DOMAIN 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VASCULAR-RELATED NAC-DOMAIN 6; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: zinc knuckle (CCHC-type) family protein (TAIR:AT3G43590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5082eggNOG:KOG4400EMBL:AB019226EMBL:BT025034EMBL:CP002688EnsemblPlants:AT5G52380EnsemblPlants:AT5G52380.1
entrez:835314Gene3D:4.10.60.10GeneID:835314GO:GO:0003676GO:GO:0008270Gramene:AT5G52380.1hmmpanther:PTHR23002
hmmpanther:PTHR23002:SF73InterPro:IPR001878InterPro:IPR025836KEGG:ath:AT5G52380OMA:QDGGTKFPfam:PF00098Pfam:PF14392
Pfscan:PS50158PhylomeDB:Q9FHC2PROSITE:PS50158Proteomes:UP000006548RefSeq:NP_200051.1SMART:SM00343SMR:Q9FHC2
STRING:3702.AT5G52380.1SUPFAM:SSF57756TAIR:AT5G52380UniGene:At.29618UniProt:Q9FHC2
Coordinates (TAIR10) chr5:-:21261521..21263061
Molecular Weight (calculated) 30039.90 Da
IEP (calculated) 10.12
GRAVY (calculated) -1.14
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNQRRRLAQ KRYKEANPEL FPKAEPTPPK DPNKKKKKKS LFKKKKPGSS TDRPQRTGSS TRHPLRVPGM KPGEGCFICH SKTHIAKLCP EKSEWERNKI
101: CLQCRRRGHS LKNCPEKNNE SSEKKLCYNC GDTGHSLSHC PYPMEDGGTK FASCFICKGQ GHISKNCPEN KHGIYPMGGC CKVCGSVAHL VKDCPDKFNQ
201: ESAQPKKTSR FDATPRGKLT KFSGDDLEDD FTEEPKSSKK INTSDDSAQN SVEVKKKKQG PKIVNFVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)