AT5G52300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CAP160 protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOW-TEMPERATURE-INDUCED 65 (LTI65); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, abscisic acid mediated signaling pathway, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf, seed; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT4G25580.1); Has 773 Blast hits to 630 proteins in 145 species: Archae - 0; Bacteria - 21; Metazoa - 354; Fungi - 108; Plants - 165; Viruses - 7; Other Eukaryotes - 118 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21237205..21239404 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65845.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||
| Length | 618 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESQLTRPYG HEQAEEPIRI HHPEEEHHEK GASKVLKKVK EKAKKIKNSL TKHGNGHDHD VEDDDDEYDE QDPEVHGAPV YESSAVRGGV TGKPKSLSHA 101: GETNVPASEE IVPPGTKVFP VVSSDHTKPI EPVSLQDTSY GHEALADPVR TTETSDWEAK REAPTHYPLG VSEFSDRGES REAHQEPLNT PVSLLSATED 201: VTRTFAPGGE DDYLGGQRKV NVETPKRLEE DPAAPGGGSD YLSGVSNYQS KVTDPTHKGG EAGVPEIAES LGRMKVTDES PDQKSRQGRE EDFPTRSHEF 301: DLKKESDINK NSPARFGGES KAGMEEDFPT RGDVKVESGL GRDLPTGTHD QFSPELSRPK ERDDSEETKD ESTHETKPST YTEQLASATS AITNKAIAAK 401: NVVASKLGYT GENGGGQSES PVKDETPRSV TAYGQKVAGT VAEKLTPVYE KVKETGSTVM TKLPLSGGGS GVKETQQGEE KGVTAKNYIS EKLKPGEEDK 501: ALSEMIAEKL HFGGGGEKKT TATKEVEVTV EKIPSDQIAE GKGHGEAVAE EGKGGEGMVG KVKGAVTSWL GGKPKSPRSV EESPQSLGTT VGTMGFSDSG 601: GSELGGSGGG KGVQDSGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)