AT5G52040.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: arginine/serine-rich splicing factor 35 (TAIR:AT4G25500.3); Has 11943 Blast hits to 9562 proteins in 408 species: Archae - 0; Bacteria - 134; Metazoa - 7691; Fungi - 1361; Plants - 1617; Viruses - 110; Other Eukaryotes - 1030 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21131881..21133318 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37419.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 324 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQGFAFVYME DERDAEDAIR ALDRFEYGRT GRRLRVEWTK NDRGGAGRSG GSRRSSSGLR PSKTLFVINF DAQNTRTRDL ERHFEPYGKI VNVRIRRNFA 101: FIQYEAQEDA TRALDATNSS KLMDKVISVE YAVKDDDSRG NGYSPERRRD RSPDRRRRSP SPYRRERGSP DYGRGASPVA HKRERTSPDY GRGRRSPSPY 201: KRARLSPDYK RDDRRRERVA SPENGAVRNR SPRKGRGESR SPPPYEKRRE SRSPPPYEKR RESRSPPPYE KRRERSRSRS KSSPENGQVE SPGQIMEVEA 301: GRGYDGADSP IRESSPSRSP PAEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)