AT5G51630.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.973 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 26204 Blast hits to 17984 proteins in 706 species: Archae - 26; Bacteria - 1932; Metazoa - 2433; Fungi - 202; Plants - 20704; Viruses - 0; Other Eukaryotes - 907 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:20970261..20974700 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133478.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1175 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MISIVVFSKK YASSTWCLNE LVEIHKCYKE LTQIVIPIFY EVDPSDVRKQ TREFGEFFKV TCVGKTEDVK QQWIEALEEV ASIAGHDSKN WPNEANMIEH 0101: IAKDVLNKLI ATSSSNCFGD LVGIEAHLKA VKSILCLESE EARMVGILGP SGIGKTTIAR ILYSKLSSQF DYHVFGSFKR TNQDNYGMKL SWEEQFLSEI 0201: LDQKDLKISQ LGVVKQRLKH KKVLIVLDDV DNLELLKTLV GQTGWFGPGS RIIVTTQDRI LLKSHKIDHI YEVGYPSRKL ALRILCRSAF DRNSPPDGFM 0301: QLANEVTELV GNLPLALNIM GSSLKGRDKE EWIEMMPSLR NSLVDGEILK TLRVSYDRLH GNYQEIFLYI ACLLNCCGVE YIISMLGDNA IIGLKILAEK 0401: SLIHISPLDK TVEMHSLLQK LGRKIVRDES FGNPGKRRFL LDAEDICDVF TDNTGTETVL GISLNTLEIN GTLSVDDKSF QGMHNLQFLK VFENWRRGSG 0501: EGILSLPQGL NSLPRKLRLL HWYKFPLRCM PSNFKAEYLV NLEMAYSQLE RLWEGTQQLG SLKKMDLSKS ENLKEIPDLS YAVNLEEMDL CSCKSLVTLP 0601: SSVRNLDKLR VLRMSSCSNV EVLPTDLNLE SLDLLNLEDC SQLRSFPQIS RNISILNLSG TAIDEESSLW IENMSRLTHL RWDFCPLKSL PSNFRQEHLV 0701: SLHMTHSKLE KLWEGAQPFG NLVNIDLSLS EKLKEFPNLS KVTNLDTLDL YGCKSLVTVP SSIQSLSKLT ELNMRRCTGL EALPTDVNLE SLHTLDLSGC 0801: SKLTTFPKIS RNIERLLLDD TAIEEVPSWI DDFFELTTLS MKGCKRLRNI STSICELKCI EVANFSDCER LTEFDDASMV RRILRTIDDL IALYEEASFL 0901: HAIFVLCRKL VSICAMVFKY PQALSYFFNS PEADLIFANC SSLDRDAETL ILESNHGCAV LPGGKVPNCF MNQACGSSVS IPLHESYYSE EFLGFKACIV 1001: LETPPDLNFK QSWIWVRCYF RDKCVEHSVQ FSWDSNKMDH LLMINFRLPT KEIIGCPSQL DTDDLMFFFY HHMYYACNSY VNPSPCSVQR IKGCGIKFWD 1101: VSPRVLSQSE LDTYFSWPVK GEGEAEGESE GESEDEQEED EDEDAYLEIE DDSSLSSFVE ENIGESFLNT NTLVR |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)