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AT5G48870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.
Computational
Description (TAIR10)
SUPERSENSITIVE TO ABA AND DROUGHT 1 (SAD1); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG1775EMBL:AB012242EMBL:AK229657EMBL:AY034896EMBL:BT025700EMBL:CP002688
EMBL:JQ612715EnsemblPlants:AT5G48870EnsemblPlants:AT5G48870.1entrez:834945GeneID:834945Genevisible:Q9FKB0GO:GO:0000398
GO:GO:0000956GO:GO:0003723GO:GO:0005681GO:GO:0005688GO:GO:0005737GO:GO:0009414GO:GO:0009737
GO:GO:0046540GO:GO:1990726Gramene:AT5G48870.1hmmpanther:PTHR20971HOGENOM:HOG000223547InParanoid:Q9FKB0InterPro:IPR001163
InterPro:IPR010920KEGG:ath:AT5G48870KO:K12624OMA:SRIWIAMPaxDb:Q9FKB0Pfam:PF01423Pfam:Q9FKB0
PhylomeDB:Q9FKB0PRIDE:Q9FKB0PRO:PR:Q9FKB0ProteinModelPortal:Q9FKB0Proteomes:UP000006548Reactome:R-ATH-430039Reactome:R-ATH-72163
RefSeq:NP_199698.1SMART:SM00651SMR:Q9FKB0STRING:3702.AT5G48870.1SUPFAM:SSF50182TAIR:AT5G48870tair10-symbols:SAD1
UniGene:At.49146UniGene:At.6838UniProt:Q9FKB0
Coordinates (TAIR10) chr5:+:19813407..19814362
Molecular Weight (calculated) 9658.74 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.00
Length 88 amino acids
Sequence (TAIR10)
(BLAST)
1: MANNPSQLLP SELIDRCIGS KIWVIMKGDK ELVGILKGFD VYVNMVLEDV TEYEITAEGR RVTKLDQILL NGNNIAILVP GGSPEDGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)