AT5G47690.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19317899..19327014 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 181462.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.09 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1607 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQKPEEQLK ELGSKLDLAP VSKDSLLKLL KEAAVCLSEL EQSPPPAVLK SIQPFLDAVI KPEILNHQDK DVKLLVASCV SEITRITAPE APYSDNIMKD 0101: IFQLIVSAFA GLNDVSGPSF GRRVLILETV AKYRSCVVML DLECDDLVKE VFTTFLDVAR DDHPEIVFSS MQNIMIVLLE ESEDVQEHLL LILLSKLGRN 0201: RSDVRDAARR LAMKVIEHCA PKVESDIKQF LISSMSGDSR FSSSQIDYHE VIYDLYRCAP QALSGVAPYL TGELLADKLE TRLKVVGLVG ELFSLPGRVI 0301: SEEFDSIFLE FLKRLTDRVV EVRMAILDHI KDCLLSDPLR AEASQIISAL CDRLLDYDEN IRKQVVAVIC DVSVSALTSI PVDTMKLVAE RLRDKAILVK 0401: TYTMERLTEL FRVYCLRCAD GKVDTGDFNW IPGKILRCLY DKDFRSDTIE YILCSSLFPS DFSVRDKVKH WIQIFSGFDK VETKAFEKIL EQRQRIQQEM 0501: QRYLSIKQTQ QTADAPEIQK KILFGFRVMS RAFSDPPKTE QNFLILDQLK DANIWKILTN LLDPNTSITQ ASRIRDDMLK ILSEKHSLYD FLSTLSIKCS 0601: YLLFSKEYVK EILAEVSVRK SSKNTLGIQP CMDFLGLLAC FCPSLFDGAE EELISFLKDD DEMMKEGTLK ILAKAGGTIR ENLIVLASSV DLLLERICVE 0701: GNRKQAKYAV HALASITKDD GLKSLSVLYK RLVDMLEDKR YQPAVLQCLG CIAQIAMPVY ETRESEVVEF IRSKILKLKS ETVDDKKLSW DDKSEICQLK 0801: IYGIKTLVKS YLPFKDAQLR AGVDDLLGIL KNILSFGEVS EDLESSSVDK AHLRLAAAKA VLRLSRHWDD KIPIEIFHLT LKTPEIPFPT AKKIFLGKVH 0901: QYVKDRVLEM KYACSFLFDI TGSNVLESEE DKHNLADIIQ HSYQTKVRKI SAQTDANSVT LYPHHILPYL VHALAHHSCP DVEKCKDVKE YEMIYRQLYL 1001: IISMLLHKEE DGKTEDIDKE REYVPTIILI FHSIKQSEDV TDATKSKNSH AICELGLSII NHLTQKEPDL QGEITPVSLP PTLYKPSEKV EGDKSQVGEE 1101: KLWLADETVL LHFRALKLES HADASVIPQT SENEVMIDGE SDGNEIPLGK IVERLRAQGT KTRKGKKNKS VPAEDENGKN DVDVLKMVRE INLDHLQMLD 1201: KFESSNGHKH SPSERAEICQ RDQKGNKRNV GDATSVVSVP KRRRSSSGHS PYKFSNSGPK VQLKASEDEL HLESDMDKNV SLDSHDENSD QEKMLESISP 1301: RKRKKSLSSK LKITESDWAL TDVERQSRSA GGGDSKLKSA SGSMKKRKNV SGLAKCSTKE NKLVNDELIG CRIEVWWPMD KRFYEGTVKS YDSTKQRHVI 1401: LYEDGDVEVL NLKKEQWELI DTGGKTAKKS RTSKGNSKKK RSSGSKPKNP DGVQRDEDPV TTTPKGKRTP KKNLKQLHPK DTPKSLSLEH EKVESRNKKR 1501: RSSALPIETE YSGEAGEEKS ESEGKSLKEG EDDEEVVNKE EDLQEAKTES SGDAEGKEAE HDDSDTEGKQ ENNEMEREAE ENAETSDNET LGAWKSKVGK 1601: SISRTAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)