AT5G42920.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : THO complex, subunit 5 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
THO5; CONTAINS InterPro DOMAIN/s: THO complex, subunit 5 (InterPro:IPR019163); BEST Arabidopsis thaliana protein match is: THO complex, subunit 5 (TAIR:AT1G45233.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17206310..17209522 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92582.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 819 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDGEIEEGM VTADEFPTPE VTTIETIQPP REPGKSPLEL LRESKTSVEE IVAKMLSMKK QGNHKSEIRE LLTQMFLNFV NLRQANRAIL TEEDKVKAET 101: ERAKAPVDFT TLQLHNLMYE KSHYVKAIKA CRDFKSKYPD IDLVPEQDFF RHAPEAIKDQ SLSSDSSHVL MPKRLNFELH QRKELCKHRA RLEQQKKSLL 201: ETIAERKKFL SSLPLHLKSL KKASLPVQNH LGIQHTKKLK QHNLAELLPP PLYVLYSQLL AQKEAFEESI ELEVVGSLKD AQAYARQQSR KDSGMSSNTE 301: SSRLEDDGPD DDDDGQRRRK RPKKLTSKEG SDKAGLYQVH PLKIVLHIYD DEIPDTKSLK LVILKFEYLL KLNVVCVGAE GSQDGPEKNI FCNLFPDDAG 401: LEPPHQSTKL ILGDGQTFDE NRTSRPYKWV QHLAGIDISP VLLGQEAHNT DPAKSDTFVP DLSLYRQQHR VQTVLRRIRL RKKAHLALAE QLDLLMKHEL 501: PVVNCEDAPW ALHKVLCALD SWLHIQSSAS KSCSLTLNSV EQVPEPMEID VDGRSISGKE DFESIREDGE LPSLVTAAAS LTSSNHTPSK VSNQARSRQL 601: ALMTKNLDSP ISKGKSPSFK KYEDDLDLVL DDDSEIDEPT GRTEAHVEEL CPEKADNSWV DYGSREFALV FSRKTDGGKL WKLEAMVQIS MEYPLRPPLF 701: SLSLHASSSS GNENGTNESD HYNELRAMEA EVNLHMLKII PSDQENYLLS HQIRCLAMLF DYYVDDPSPD SKRGTATTVV DVGLCKPVDG KLLVRSFRGR 801: DHRKMISWKG RGCASGYPC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)