AT5G42870.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.984 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phosphatidic acid phosphohydrolase 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
phosphatidic acid phosphohydrolase 2 (PAH2); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17185719..17189681 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100710.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.43 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||
| Length | 925 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNAVGRIGSY IYRGVGTVSG PFHPFGGAID IIVVEQPDGT FKSSPWYVRF GKFQGVLKNG RNLIRIDVNG VDSGFNMYLA HTGQAYFLRE VEDVVGESES 101: GEVYTLSSGD EAETTSRDDV VDKVKIPLKS RSCNYDSPSP RTGNGKIVGK PGILGYVFGG RSVRESQDCG VERAEIAADL LEVKWSTNID TRKRGKGMSS 201: ESLDGKDYGE STSTSGKSCV EGSSEMLVDS DSILETPLVA SPTLRFLDEK EQDFRESTNV EDYCEEDGSS GVVVENGLCE ASSMVFSVTS EGSGNVEIFV 301: EPRTEALAED AVSGSDLDSK QELLRAPESV EIATLGSADQ ADMGSIGTSQ EGSSTGSPVQ DENKITIKDM HISAGDFEKS QSASGESILQ PEIEEEQFSF 401: SDLDECKPGG NSSVGSSSSD TVKVDGKESY DETKTSPEKG VENTMALSEP INIERKKDIF TDEMERLVGS LPIMRLQNND DMDASPSQPL SQSFDPCFNT 501: SKLDLREDES SSGGLDAESV AESSPKLKAF KHVIANPEVV ELSLCKHLLS EGMGAEAASQ AFNSEKLDME KFASLGPSIL ENDKLVVKIG GCYFPWDAAA 601: PIILGVVSFG TAQVFEPKGM IAVDRNEKPG DVLAQGSGSW KLWPFSLRRS TKEAEASPSG DTAEPEEKQE KSSPRPMKKT VRALTPTSEQ LASLDLKDGM 701: NSVTFTFSTN IVDARIYLWK WNSRIVVSDV DGTITRSDVL GQFMPLVGID WSQTGVTHLF SAVKENGYQL IFLSARAISQ ASVTRQFLVN LKQDGKALPD 801: GPVVISPDGL FPSLFREVIR RAPHEFKIAC LEEIRGLFPP EHNPFYAGFG NRDTDEISYL KVGIPRGKIF IINPKGEVAV NRRIDTRSYT NLHTLVNRMF 901: PATSSSEPED FNTWNFWKLP PPSLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)