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AT2G15900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.908
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phox-associated domain;Phox-like;Sorting nexin, C-terminal
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phox-associated domain;Phox-like;Sorting nexin, C-terminal; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PX-associated, sorting nexin 13 (InterPro:IPR013996), Sorting nexin, C-terminal (InterPro:IPR013937), Phox-like (InterPro:IPR001683), Phox-associated domain (InterPro:IPR003114); BEST Arabidopsis thaliana protein match is: Phox-associated domain;Phox-like;Sorting nexin, C-terminal (TAIR:AT1G15240.2); Has 1078 Blast hits to 871 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 658; Fungi - 203; Plants - 141; Viruses - 2; Other Eukaryotes - 74 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMHNeggNOG:ENOG4110DIKEMBL:CP002685EnsemblPlants:AT2G15900
EnsemblPlants:AT2G15900.1entrez:816086Gene3D:3.30.1520.10GeneID:816086
GO:GO:0016021GO:GO:0035091Gramene:AT2G15900.1hmmpanther:PTHR22999
hmmpanther:PTHR22999:SF23InParanoid:F4IJE1InterPro:IPR001683InterPro:IPR003114
InterPro:IPR013937iPTMnet:F4IJE1KEGG:ath:AT2G15900KO:K17925
OMA:ESATESMPaxDb:F4IJE1Pfam:PF00787Pfam:PF02194
Pfam:PF08628Pfscan:PS50195Pfscan:PS51207PRIDE:F4IJE1
PROSITE:PS50195PROSITE:PS51207ProteinModelPortal:F4IJE1Proteomes:UP000006548
RefSeq:NP_179190.3SMART:SM00312SMART:SM00313SMR:F4IJE1
SUPFAM:SSF64268TAIR:AT2G15900TMHMM:TMhelixUniGene:At.48478
UniProt:F4IJE1
Coordinates (TAIR10) chr2:+:6927390..6932535
Molecular Weight (calculated) 113724.00 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.46
Length 994 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAMETIQDL IEEAKVRAVW WCLCIFSVTY FLTHTSIYWW LNLPIAILIC GGARFFFNHF EFRWKVPATP RQSQLSYLEK KQLSVNDPRL SGIPPPPRWK
101: KKIDSPVVEA AINDFIDKIL NDFVVNLWYS LITPDKEAPE LIRAVIMDAL GEISVRVKEI NIVDLLTRDI VDLIGDHLES FRRNQAAIGT DVMKTLSSEE
201: RDERLKYHLM ASGELYPALV SPESEYKVLQ KIVAGILSVV LRPREAQCPL VRTIAREIVT CLVIQPLLNL ACPERINEVF EIIINLIKEG NFEQFTAEEQ
301: NVNSAPLSAF DSQAKNMNLT KAIEQKSPNI NDRHPDLHVQ QHSADWARSL EVATQRRTEV LRPENLENMW TKGRNYQKKE YKKSLKKGSS TGAKENAVAQ
401: LPPKVSTDKQ SQAQMAEEFS KSSLHDGGHQ IYEADVRKES RSDGNKNRLK RSNSTSDLNL RPETSLALLG VSEGPLITEF YTTDFIKHND NYISDNKSQS
501: IVLHKEGQHC LKLKCRVLGA YFEKQGSKSF AVYSIAVTDV ENKTWFVKRR YSNFERLHRQ LKEIPNYNLQ LPPKRIFSSS TEDAFVHRRC IQLDKYLQDL
601: LCIANVAEQH EVWDFLSAAS KNYSFGKSSS VMKTLAVNVD DAMDDIVRQF KGVSDGLMRK VVGSPLDEHD HAPTRHLSWS VNEISTQLSR ESATESMHSS
701: ISDTEDIDKL GENTQGEGRF DSEANGWHSD NELDSKYVPP RVVRRLGEPE SSPSEKENDF KAKSQVRGST DFQHADPLTA LVQNPHGIPE WMPPNVSVPI
801: LNLVDKVFQL NRRGWLRRQV FWISKQILQL VMEDAVDDLL MREICWLRNE DTIAQGIRWA QDILWPNGVF FTRLNDSQEA SDETDPSEKT YQMAGQLGGM
901: KVTKPSSFEQ QLEAFRRASE IKKFLFDGAP TALVSLVGHN QYRRCARDIF YFTQSNICIK QLTFAILELL LRSVFPELQD LLRDIRENPQ GRSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)