AT5G42560.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.914 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Abscisic acid-responsive (TB2/DP1, HVA22) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Abscisic acid-responsive (TB2/DP1, HVA22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 2054 Blast hits to 2008 proteins in 266 species: Archae - 0; Bacteria - 108; Metazoa - 929; Fungi - 303; Plants - 514; Viruses - 6; Other Eukaryotes - 194 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17015703..17016969 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32189.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 285 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLGYAYPAY ECYKTVEKNR PEIEQLRFWC QYWILVACLT VFERVGDAFV SWVPMYSEAK LAFFIYLWYP KTRGTTYVYE SFFRPYLSQH ENDIDHSLLE 101: LRTRAGDMAV IYWQRVASYG QTRILEILQY VAAQSTPRPQ PPQKRGGRAN QAPAKPKKAP VPQSEPEEVS LSSSSSSSSS ENEGNEPTRK VSGPSRPRPT 201: VTSVPAADPK NAGTTQIAQK SVASPIVNPP QSTTQVEPMQ IEEVEGEAES GNENPNPEGP KETVMEETIR MTRGRLRKTR SEESR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)