AT5G41060.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.916 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G26935.1); Has 5132 Blast hits to 5125 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 730; Plants - 844; Viruses - 0; Other Eukaryotes - 1357 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:16435949..16437540 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44655.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLATFIGMLL HTKIFCLQGR FIFGPDVRSL GLTISLIVAP VTIFCIFVAS KLMDDFSDSW GVSIILVAVV FTIYDLILLM LTSGRDPGII PRNSHPPEPE 101: VVDGNTGSGT SQTPRLPRVK EVEVNGKVFK VKYCDTCMLY RPPRCSHCSI CNNCVERFDH HCPWVGQCIA QRNYRFFFMF VFSTTLLCVY VFAFCCVYIK 201: KIKESEDISI LKAMLKTPAS IALILYTFIS TFFVGGLTCF HLYLISTNQT TYENFRYSYD RHSNPHNKGV VDNFKEIFFS PIPPSKNNFR AMVPRENPMP 301: SRSVVGGFMS PNMGKANDDI EMGRKGVWAM AEHGDGKDGN NNERFHVNDN ELNELSPDMG NIVNGDEQIN RPNNHPRNAN WEMSPEVMAL SARRA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)