AT5G28350.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.864 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:10320301..10326781 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122142.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||
| Length | 1087 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYMAYGWPQV IPLLPGSCPS SQRVVYLKLA GRLLLVVSPS HLELWGSSQQ RVRLGKYMRD DKSVREEGEN LQAVWSPDAK LIAVLVPFAG KDLSVSNFVR 0101: DSKTMLLGLS DGSLYSISWK GEFGGAFSIG SHPSDSNDDR LLSYTLGNGL VSGVASPTLA SDDKFSTNPA IVQLELCTRS KLLFVLNSDG QLVVCSVNKK 0201: GLKYTESIRA EKKVGGDAVC ASVASEQQIL AVGTRKGMVE LYDLSHSISL LRTVSLHDWG YSADYTGPVN NIAWTPDNSA FAVGWKSRGL AVWSVSGCRL 0301: MSTVRQIGLT STSSPKINPK QDCKYEPLMS GTSAIQWDEY GYRLFATEEA SYDRILAFSF GKCCLNRGVS GKTYVRQVMY GDDRLLMVQA EDTDELKLLH 0401: LKLPVSYISQ NWPVQHVAAS EDGKYLAFAG LHGLILYDIR FKKWRVFGDV SQEQQIHCKG LLWLGKIVVI CNYIEASETY ELLFYPRYHL DQSSLLCRKV 0501: LLGKPMVMDV YQDYILVSYL PFFIHVYHVK IYGELTPSSK ADLQLSTVRE LSIMTAKSHP AAMGFVPDQH LREGELDNDN LSSDLSDREP SRCLILRGNG 0601: ELSLLDLVDG RERELTDSVE LFWVTCGQSE EKTNLVEEVS WLDYGHRGMQ VWYPSLGDDP FMQEDFLQLD PELEFDREVY PLGLLPNVGV VVGVSQRMSF 0701: SASAEFACFE PTPQAQTILH CLLRHLLQRD KNEEALLLAQ LSAEKPHFSH CLEWLLFTVF DAEISRPNPN RNQISGPGHL KKLSLLRKAC DLIKKFPEYY 0801: DVVVNVARKT DARHWADLFS AAGISTTLFE DCFQRRWYRT AACYILVIAK LEGVAVSQYC ALRLLQATLD ESLYDLAGEL VRFLLRSGRD IEQAPTESDS 0901: LSPKLLGFLI FGSSHKKSSL DKSSSFKEQS PHVASVKSIL ESHASYLMSG KELSKLVAFV KGTQFDIVDF LQRERYGCAQ LQNFAAGLEL IGQKLQMSEL 1001: QNRLDAEFLL AQMCSVKFKE WIVVLATLLQ RSEVLYDIFR YDLRLWKAYS VTLESHLAFA HYHDLLQILE AKLSATSREE SNRGSIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)