AT5G16280.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.848 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:5323377..5331345 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 140313.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||
| Length | 1244 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVEPVNSSLG KMLLEEISPV VMVLCTPLVE DTFLRNGLSF VETLKPFCNF SNIDVPVRTS SDQLYRLKKF TLRLFYASDI KQPNVEVAKQ RLERVITQAG 0101: EKDFQDLKSD PPQITDILSN PESEIAPSWF RYYNKELIRT LSFSDHEAFD HPVACLLVVS SKDEEPIKKF VDLFNSNRLP TDGTMDPNIL KHYLLVHDNQ 0201: DATTERTSKV LSEMRSQFGN NECNLLCTNS SKEGNVEHQA NPWASFKSSV SADKLGCALT GDDIVEIKDL MQEFASRHII PYMEQKVREL NQQISATRKG 0301: LKNQFKNFLW RKGKDDNPDA TKGSMYTYSS TESQIRILGD YAFMLHDYEL ALSSYRLIYT DYNIDKAWKH YAGVQKLGKS GFQNATRCGL WWAEMLKARD 0401: QHKEAASVYF RICGEEPLHA AVMLEQASYC FMLTKPAMLH KYGFHLVLSG DHYKNCNQVN HAIRTYKSAI SVYKSTTWSH IKDHLYFHIG QWYAIVGMHD 0501: VAVRNMLKVL DCGYQSKATQ EIFLRDFFDI VKKTGMKHEV VGLQLPILNM SSLQVIYEDH RTYASQASAL VEESIWQSLE DDIIPSLNSG KSNWLELQSK 0601: LLPKKYKESN VCVAGESVKL DLEFRNPLLI STSITSVSLI CELTANSDDL KLVDNEPSGS SLSPEISTEH NQVTTSGFSS FTLSEVDFTL GGGEKKLVRL 0701: TVTPSEEGIL KIVGVRWELS GSIVGVHYFQ SVSVKAKTAR GRRKNKLTPT DALKFLVIKS LPRLEGSIDH LPEKLYAGDL RYLVLELRNK SESPTKNLKM 0801: KISHPRFVSP GNHEEELTTE FPDCLKKGDE HNIVQRESNR TSSVFAFPKD VSLQGDRSLR WPLWLRAAIP GTISLYFTIY YEMENVSSMK YRTLRMHYNL 0901: QVLPSLQTSF KVTPSPSRLQ EFLVRMDIVN RAKSDCFQIH QLSTVGCRWG ISLLQPVDTI LPSKFLLAGQ ALSCFFMIKD CRKSGTEDEE TTSLPPSQTD 1001: VKLYTQDDDE KLFDIVSSPL ASFHESERSC QGPSVQVSPN TVDFILISRL AKSSSPSAVP DLPKILSHHS CHNSIRSSSP ISWSLDGPQT IHHDFSTSLC 1101: EIKLKMVIRN TSDGISSVTI NTNDFLPDAA ATTSSSGNQS GWRYVPTITE EMKLTSDVMG SRLGKPPSSM ESSPPFIWSG LSSTKIQIQP LSTTEIPLQI 1201: SVFSPGIYDL SSYELNWELS EHESATSSGT CQGYPYYLTV LQSE |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)