AT5G13890.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.633 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF716) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF716) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32120.1); Has 219 Blast hits to 219 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4479940..4480872 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33925.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.60 | ||||||||||||||||||||||||||||||||
| Length | 310 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEMMYKLFA SASLLTLGLY HLICTFFHLL KSPQSYAAKP FYPFPRLSSV TGNNHHNHNR LQNLPLFILI LSLFVAFLHE TLISFYSDPL VKGSTPVHRF 101: SSLNSAAVFF LFLIIAIYYL LSDSTSLIPL PSDLLFALAS VGFFLHYSAA SSSAAIQTSD LQAHCDSLSA RISALCSLLC LLLACRSRLF IADAALAAAI 201: CLQGLWQLQT GLSLYVDGFI PEGCHRLLDV QSGVEGSTQC DIQDSKLRAV SILDLMFTVH VVLVVILIFV TYTMVVMAAG VRRTGSYEAL PTNNADSNHI 301: QMKSLTGTQA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)