AT5G11700.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3762961..3771123 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 159232.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||
| Length | 1476 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MARFQFCCVF VLVALAVLAV NPSSSYRFTI VEPKSGSDSD LDSDSESLLF HQDYSPPAPP PPPPHGPSVS CSEDLGGVGF LDTTCKIVAD LNLTHDVYIA 0101: GKGNFIILPG VRFHCPIPGC SIAINVSGNF SLGAESTIVA GTLELTAGNA SFANGSAVNT TGLAGSPPPQ TSGTPQGIDG AGGGHGGRGA CCLTDTKKLP 0201: EDVWGGDAYS WSTLQKPWSY GSKGGSTSRE IDYGGGGGGK VKMDILQLLD VNGSLLANGG YGGAKGGGGS GGSIYIKAYK MTGIGKISAC GGSGYGGGGG 0301: GRVSVDIFSR HDDPKIFVHG GYSIGCPDNS GAAGTLYDAV PRSLFVSNYN QTTDTYTLLL EFPFQPLWTN VYIQDKARAT CPLLWSRVQV QGQISLLCGG 0401: VLSFGLAHYG TSVFELLAEE LLMSDSTIKV YGALRMTVKM FLMWNSELHL DGGGGDTTVS TSMLEASNLF VLRGSSVIRS NANLGVHGQG FLNLTGPGDS 0501: IEAQRLVLSL FYRIYVGPGS ILRAPLLNAS RDAVTPKLYC ERQDCPYELL NPPEDCNVNA SLSFTLQICR VEDILVEGFI KGSVVHFHRA KTVTLEPSGE 0601: ISASGMGCRG GVGEGKLLGN GFGSGGGHGG KGGRVCYNNS CVEGGITYGN ANLPCELGSG SGDFSPGYSS AGGGIVVIGS MEQPLSGLSL EGSIRVDGES 0701: VKRLSRDENG SIVAPGGGSG GTVLLFLRYL ILGESSLLSS GGGSGSPGGG GGGGGGRIHF HWSNIPTGDI YQPIASVKGI IHARGGAAAD DGFYGKNGTI 0801: TGTACPKGLH GIFCKECPSG TFKNVTGSDP SLCRPCPVDE LPTRAVYVTV RGGVSETPCP YRCISERYHM PHCYTALEEL IYTFGGPWLF GLLLMGLLIL 0901: LALVLSVARM KFVGVDDLPG PAPTQHGSQI DHSFPFLESL NEVLETNRAE QSQSHVHRMY FMGPNTFSEP WHLSHIPPEE IKEIVYEAAF NTFVDEINSI 1001: AAYQWWEGAI YSILSVVAYP LAWSWQQWRR KMKLQKLREF VRSEYDHSCL RSCRSRALYE GLKVAATSDL MLAYLDFFLG GDEKRTDLPP RLHQRFPMPI 1101: LFGGDGSYMA PFSLQNDNIL TSLMSQLGSP TTWYRLVAGV NAQLRLVRRG RLRSTFHSVL RWLETHANPA LETHGIRVDL AWFQTTACGY CQYGLLIHTV 1201: EDCEPTSPQC VSETTWTEIQ PRHDTILSSK FKISFVMSLF IMFSYYGVNA HKENSPPHLR ESRLFNQPHS NTEDYTTRRK NYGGIIDLDS LPSLKEKRDM 1301: FFLLSFLVHN TKPVGHQDMV GLVISMLLLG DFSLVLLTLL QLYSISLLDV LLALFILPLG LLLPFPAGIN ALFSHGPRRS AGLARVYALW NFMSLVNVFV 1401: AFLCGYVHYH SESSASKKIP FQPWNINMGE SEWWIFPAGL VVCKIMQSQL INRHVANLEI QDRSLYSKDY ELFWQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)