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AT5G04310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G54920.1); Has 1753 Blast hits to 1747 proteins in 285 species: Archae - 0; Bacteria - 762; Metazoa - 0; Fungi - 280; Plants - 694; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IGFPEMBL:CP002688EnsemblPlants:AT5G04310EnsemblPlants:AT5G04310.1entrez:830310
Gene3D:2.160.20.10GeneID:830310GO:GO:0016021GO:GO:0030570GO:GO:0031225GO:GO:0045490GO:GO:0046872
Gramene:AT5G04310.1hmmpanther:PTHR31683hmmpanther:PTHR31683:SF11InParanoid:F4JW80InterPro:IPR002022InterPro:IPR011050InterPro:IPR012334
InterPro:IPR018082KEGG:00040+4.2.2.2KEGG:ath:AT5G04310KO:K01728OMA:RTDGDIMPaxDb:F4JW80Pfam:PF00544
PRIDE:F4JW80PRINTS:PR00807ProteinModelPortal:F4JW80Proteomes:UP000006548RefSeq:NP_196051.2SMART:SM00656SMR:F4JW80
STRING:3702.AT5G04310.1SUPFAM:SSF51126TAIR:AT5G04310TMHMM:TMhelixUniGene:At.26658UniPathway:UPA00545UniProt:F4JW80
Coordinates (TAIR10) chr5:-:1203356..1207352
Molecular Weight (calculated) 56044.10 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.20
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAHERRIHN LQKPTCICII WFCLLVSLSH HGRASSTSAS IFNLSLPHQH PFPEHVVLNV QRKLNDSLSR RQLLTYQQDD GTTASSPIPS CITGNPIDDC
101: WRCDPNWSAN RQRLADCSIG FGQGTLGGKG GQFYLVTDSS DNDAANPIPG TLRHAVIQPE PLWIIFSSDM GIKLKHELII GSYKTIDGRG TNIQITGHGC
201: LTIQQVSHVI IHNVHIHHCK PSGNTLVASS PTHVGFRGVS DGDGISVSAS HHIWVDHCSL GYCADGLIDV ILASTAVTIS NNYFSHHDEV MLLGHDDRYT
301: ADKGMQVTIA FNHFGEGLVQ RMPRCRHGYI HVVNNDFTAW EMYAIGGSAS PTINSQGNRY TAPIDPNAKE VTKRVDSNEK HWSGWNWRTE GDVMVNGAFF
401: VPSGDGVSPA YARATSVQPK AAAIIDQLTV NAGVFGDPSG RNGQGGSFPG ITNGGGTITR GYSKSGPAGG GSGSDSDDGL FTLIFGNNSG AVALRPGQVW
501: SILLIIILYW YIPHHTRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)