AT4G39420.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.954 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18339731..18354701 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 355051.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 3184 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKLVKEGPT LLQLHKWEPS QFQLKLSEFR EAFISPSRQL LLLLSYHSEA LLLPLVAGRS IGSEVSLSGD NEELNSPSCS GGSDPEKIES PCGSGVGSGE 0101: PGFVDNCSSS CNSFPFIFDA KSVAWGSCGD TYNRHKDPLF RELLFVSGNH GVTVHAFCCT KDLSDKAKGK PNGELRHGEW VEWGPSRLSQ KSEPERVSSS 0201: DGSKQWMQSF LIDLETTVID GTRQSRFPEK SAFPGSAEVV SFSILNTDLP FSNLLFQDNS ILPKDNMPED GNVNDNNFLV ASDPTALDEK SRADMPVNNV 0301: SVNSLYRCIK VFSSDAHSLI GFVMELSDCA STPRRNENER SKGKRNIFVA KLFSWGIEWV SLVKFGESSI GPTNEWADFR LSDNFVICLS VSGLIFLYDV 0401: NSGDFISHGD ILQTCGRGLH SSSDRQEATA EADQLSDFQN RAPSMSKTCI VGSTDRRKFR KLIVASHTPL IAAVDENGLV YVLCVNDFVS KEYHMAAEPI 0501: PDLLHLGLGS LVGWKIGGMD IGQKKVHHPS SSGSRGEDAF SRRDLSFSAS EISMSDPCLE RQQNNFDRRA GYSGSWLSGF SAQPKTNGLK LEKFRRDSHV 0601: TRKMFLSAEK LGLDDNICFS PYGFTHFSRK YTNKDDRSCK IFHYSLQTHM TARDDSYLNY DVNKNSIQGA EENFIGESVG CSFQGFLFLV TCDGLSVFLP 0701: SISITSNYPT IEAIEYLQPF QTTVMGYRGR DDLAAGESRF PWQVEVIDRV ILFEGPEVAD HLCLENGWDL KIVRLRRLQM ALDYLKYDDI NESLKMLGNV 0801: KLAEEGMLRV LFSAVYLLSR KDRNDNEISA VSRLLGLATM FATEMIRRYG LLEYRKDVYM FDSKPRTQIL SLPAVSLNID VMENSRRLSE MGYLLEITRN 0901: IQSRITRKFK KLGKGNNEKS LNLVDPNSLQ DDSQLEIVPD PASAESRQLD TSLFDTNEEL ALTPMGMMTA GQIIDERSYA SGLVPQGIVE EKKVLPLENP 1001: KEMMARWKAN NLDLKTVVKD ALLSGRLPLA VLQLHLQHSK DVVEDGEHHD TFTEVRDIGR AIAYDLFLKG EPGVAIATLQ RLGEDVEACL NQLVFGTVRR 1101: SLRYQIAEEM RKLGFLRPYE DNVLERISLI ERLYPSSHFW ETYLARRKEL LKAALPFDSS EISLHLGGSS LFQHLKIECG EVDGVVLGSW TKINESASEH 1201: APDETDAVAG YWAAAAVWSN AWDQRTFDHI VLDQPLVMGV HVPWDSQLEY YMCHNDWDEV LKLLDLIPED VLYDGSLQIA LDGPKQSSGV NYSVSSRSEY 1301: ICSIEEVDAV LMDVPYIKIF RLPGDIRCSL WLTTLMEQEL ARKLIFLKEY WENALDVVYL LARAGVILGN CEVSFKEETC TPSLDLCLSI KKGGANVDTL 1401: NAVHKLFIHY CTQYNLPNLL DLYLDHHELV LDNDSLSSLQ EAVGDSHWAK WLLLSRIKGR EYDASFSNAR SIMSRNGAPN SEPSVPEIDE MVCTVDDIAD 1501: GAGEMAALAT MMCAPVPIQK SLSTGSVNRH TNSSAQCTLE NLRSFLQRFP TLWSKLVSAC LGEDISGNLL RTKTKNVLSE YLNWRDGVFF STARDTSLLQ 1601: MLPCWFPKAV RRLVQLYIQG PLGWLSFSGY PTGEYLLHRG VEFFINVDDP TEISAISWEA IIQKHIEEEL HHTKTEGTEL GLEHFLHRGR PLAAFNAFLE 1701: HRVEKLKLED QSGSSIHGQR NMQSDVPMLL APLTQSDESL LSSVIPLAIT HFGDSVLVAS CAFLLELCGL SASMLRIDVA SLRRISSFYK SNGNADMAHQ 1801: KSLKRSMFHS VSSEDDLMGS LARALANEYA YPDISSVPKQ KQNPSISGSQ PGLPLMLVLH HLEQASLPEI GVGRKTSGYW LLTGDGDGSE LRSQQTSASL 1901: HWSLVTLFCQ MHKIPLSTKY LAMLARDNDW VGFLSEAQLG GYPFDTVLNV ASKEFGDQRL KAHILTVLRY ANSKKKATTS FSDDPSRGLS CSPSEGGAYV 2001: SAELFRVLAY SEKLKNPGEY LLSKAKEFSW SILALIASCF PDVSPLSCLT IWLEITAARE TSSIKVNDIT TKIAENIGAA VVSTNSLPTD ARGVQFHYNR 2101: RNPKRRRLTA HTSVDLLASA NSLNISAGKT FCSHRTEAAE DEKAEDSSVI DDSSDEHASL SKMVAVLCEQ RLFLPLLKAF DLFLPSCSLL PFFRALQAFS 2201: QMRLSEASAH LGSFWGRVKE ESMHFQSNTA KDVNFGASWI SRTAVKAADA VLSACPSPYE KRCLLQLLAA TDFGDGGSAA TYYRRLYWKV NLAEPSLREN 2301: DLDLGNESLD DGSLLTALEK NRQWEQARNW AKQLETIGAT WTSSVHHVTE TQAESMVAEW KEFLWDVPEE RIALWGHCQT LFIRYSFPAL QAGLFFLRHA 2401: EVVEKDLPAR EIYELLLLSL QWLSGLTTLS HPVYPLHLLR EIETRVWLLA VEAESHVKNV GAFSPSSIGK DMVNGYSSNL IDRTASIITK MDSHISSATK 2501: NRIGEKHDAR AAGQGNQRNQ DTSTSIFGAS TKPKRRAKGN VPQIRHFVDS SDRNTDFEDS SSLINIKSEF QLQEESTGLE ISLSKWEESI EPAELERAVL 2601: SLLEFGQVTA AKQLQLKLAP GNLPSELIIL DAVMKLAMLS TPCRQVLLSM LDDEVRSVIQ SHSLKIDQPM IEPLQILENL STILNEGSGR GLARKIIAVI 2701: KAANILGLTF TEAYQKQPIE LLRLLSLKAQ DSFEEACLLV QTHSMPAASI AQILAESFLK GLLAAHRGGY IDSQKEEGPA PLLWRFSDFL KWAELCPSEQ 2801: EIGHALMRLV ITGQEIPHAC EVELLILSHH FYKSSTCLDG VDVLVALAAT RVEAYVAEGD FSCLARLITG VGNFHALNFI LNILIENGQL DLLLQKFSAA 2901: ADANTGTAQA VRSFRMAVLT SLNLYNPNDH DAFAMVYKHF DMKHETATLL EARADQAAQQ WFLRYDKDQN EDLLDSMRYY IEAAEVHTSI DAGNKARKAC 3001: GQASLVSLQI RMPDSKWLCL SETNARRALV DQSRFQEALI VAEAYGLNQP SEWALVLWNL MLKPELAEDF VAEFVAVLPL QASMLLELAR FYRAEMAARG 3101: DQSQFSVWLT GGGLPAEWAK YMWRSFRCLL KRTRDLRLRL QLATTATGFA DMVDVCMNAL DKVPENAGPL VLKKGHGGGY LPLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)