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AT4G38660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.950
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At4g38660-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pathogenesis-related thaumatin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: THAUMATIN-LIKE PROTEIN 1 (TAIR:AT4G24180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJPIeggNOG:ENOG410YD5YEMBL:AK228584EMBL:AY070407EMBL:AY096582EMBL:CP002687EnsemblPlants:AT4G38660
EnsemblPlants:AT4G38660.1entrez:830022ExpressionAtlas:Q8VYN5Gene3D:2.60.110.10GeneID:830022GO:GO:0031225Gramene:AT4G38660.1
hmmpanther:PTHR31048hmmpanther:PTHR31048:SF4InterPro:IPR001938OMA:FVNKCEYPANTHER:PTHR31048Pfam:PF00314Pfscan:PS51367
PhylomeDB:Q8VYN5PRINTS:PR00347PROSITE:PS51367Proteomes:UP000006548RefSeq:NP_568046.1SMART:SM00205SMR:Q8VYN5
STRING:3702.AT4G38660.1SUPFAM:SSF49870TAIR:AT4G38660TMHMM:TMhelixUniGene:At.27568UniProt:Q8VYN5
Coordinates (TAIR10) chr4:-:18066448..18067984
Molecular Weight (calculated) 35439.00 Da
IEP (calculated) 4.27
GRAVY (calculated) -0.11
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNLSSRRAS STLTLSFTVL LLASTGSYGS TFTFANRCGY TVWPGILSNA GSPTLSTTGF ELPKGTSRSL QAPTGWSGRF WARTGCKFDS SGSGTCKTGD
101: CGSNAVECAG LGAAPPVTLA EFTLGTGGDD FYDVSLVDGY NIPMIVEVAG GSGQCASTGC TTDLNIQCPA ELRFGDGDAC KSACLAFRSP EYCCSGAYAT
201: PSSCRPSVYS EMFKAACPRS YSYAYDDATS TFTCAGGDYT VTFCPSSPSQ KSTSYSPPVT DSSSTSQGSD PVPGSDTGYA GQGQQTPGQG NVYGSQGTGS
301: EMGTGETMLQ DGSWMAGLAM GEASRPAGVS LTVLLAAFTF PFIFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)