AT4G23800.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HMG (high mobility group) box protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HMG (high mobility group) box protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein (TAIR:AT4G11080.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12390228..12392516 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52547.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.31 | ||||||||||||||||||||||||||||||||
| Length | 450 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATNADPAPT KKPRNSRKAL KQKNELVETP PSPVSVKGKS AKSFEQDLME MQTMLEKMKI EKDKTEELLK EKDEILRKKE EELETRDAEQ EKLKVELKKL 101: QKMKEFKPNM TFACGQSSLT QAEQEKANKK KKKDCPETKR PSSSYVLWCK DQWTEVKKEN PEADFKETSN ILGAKWKSLS AEDKKPYEER YQVEKEAYLQ 201: VIAKEKREKE AMKLLEDDQK QRTAMELLDQ YLNFVQEAEQ DNKKKNKKEK DPLKPKHPVS AFLVYANERR AALREENKSV VEVAKITGEE WKNLSDKKKA 301: PYEKVAKKNK ETYLQAMEEY KRTKEEEALS QKKEEEELLK LHKQEALQML KKKEKTDNLI KKKKNENVDP NKPKKPASSY FLFSKDERKK LTEERPGTNN 401: ATVTALISLK WKELSEEEKQ VYNGKAAKLM EAYKKEVEAY NKKSAATTSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)