AT4G21065.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.715 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G59720.1); Has 38274 Blast hits to 14497 proteins in 292 species: Archae - 1; Bacteria - 13; Metazoa - 163; Fungi - 128; Plants - 37354; Viruses - 0; Other Eukaryotes - 615 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11245976..11247763 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67104.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.00 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 595 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPFSETSVL LLPMVEKCIN LLQTYGVSSI TKLRQIHAFS IRHGVSISDA ELGKHLIFYL VSLPSPPPMS YAHKVFSKIE KPINVFIWNT LIRGYAEIGN 101: SISAFSLYRE MRVSGLVEPD THTYPFLIKA VTTMADVRLG ETIHSVVIRS GFGSLIYVQN SLLHLYANCG DVASAYKVFD KMPEKDLVAW NSVINGFAEN 201: GKPEEALALY TEMNSKGIKP DGFTIVSLLS ACAKIGALTL GKRVHVYMIK VGLTRNLHSS NVLLDLYARC GRVEEAKTLF DEMVDKNSVS WTSLIVGLAV 301: NGFGKEAIEL FKYMESTEGL LPCEITFVGI LYACSHCGMV KEGFEYFRRM REEYKIEPRI EHFGCMVDLL ARAGQVKKAY EYIKSMPMQP NVVIWRTLLG 401: ACTVHGDSDL AEFARIQILQ LEPNHSGDYV LLSNMYASEQ RWSDVQKIRK QMLRDGVKKV PGHSLVEVGN RVHEFLMGDK SHPQSDAIYA KLKEMTGRLR 501: SEGYVPQISN VYVDVEEEEK ENAVVYHSEK IAIAFMLIST PERSPITVVK NLRVCADCHL AIKLVSKVYN REIVVRDRSR FHHFKNGSCS CQDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)