AT4G15530.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 plastid 0.500 ASURE: cytosol,plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pyruvate orthophosphate dikinase | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
The product of this shorter transcript (no chloroplast targeting sequence) was shown to accumulate in the cytosol, whereas the longest transcript was found in the chloroplast. They were also found in slightly different tissues. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pyruvate orthophosphate dikinase (PPDK); FUNCTIONS IN: kinase activity, pyruvate, phosphate dikinase activity; INVOLVED IN: phosphorylation, response to absence of light; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PEP-utilising enzyme, mobile domain (InterPro:IPR008279), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), Pyruvate, phosphate dikinase (InterPro:IPR010121), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192), PEP-utilising enzyme, mobile region, conserved site (InterPro:IPR018274), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), PEP-utilising enzyme (InterPro:IPR000121); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8864828..8869129 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93385.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 857 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSLLGGKGA NLAEMASIGL SVPPGLTIST EACQQYQIAG KKLPEGLWEE ILEGLSFIER DIGASLADPS KPLLLSVRSG AAISMPGMMD TVLNLGLNDQ 101: VVVGLAAKSG ERFAYDSFRR FLDMFGDVVM GIPHAKFEEK LERMKERKGV KNDTDLSAAD LKELVEQYKS VYLEAKGQEF PSDPKKQLEL AIEAVFDSWD 201: SPRANKYRSI NQITGLKGTA VNIQCMVFGN MGDTSGTGVL FTRNPSTGEK KLYGEFLVNA QGEDVVAGIR TPEDLDTMKR FMPEAYAELV ENCNILERHY 301: KDMMDIEFTV QEERLWMLQC RAGKRTGKGA VKIAVDMVGE GLVEKSSAIK MVEPQHLDQL LHPQFHDPSG YREKVVAKGL PASPGAAVGQ VVFTAEEAEA 401: WHSQGKTVIL VRTETSPDDV GGMHAAEGIL TARGGMTSHA AVVARGWGKC CIAGCSEIRV DENHKVLLIG DLTINEGEWI SMNGSTGEVI LGKQALAPPA 501: LSPDLETFMS WADAIRRLKV MANADTPEDA IAARKNGAQG IGLCRTEHMF FGADRIKAVR KMIMAVTTEQ RKASLDILLP YQRSDFEGIF RAMDGLPVTI 601: RLLDPPLHEF LPEGDLDNIV HELAEETGVK EDEVLSRIEK LSEVNPMLGF RGCRLGISYP ELTEMQARAI FEAAASMQDQ GVTVIPEIMV PLVGTPQELG 701: HQVDVIRKVA KKVFAEKGHT VSYKVGTMIE IPRAALIADE IAKEAEFFSF GTNDLTQMTF GYSRDDVGKF LPIYLAKGIL QHDPFEVLDQ QGVGQLIKMA 801: TEKGRAARPS LKVGICGEHG GDPSSVGFFA EAGLDYVSCS PFRVPIARLA AAQVVVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)