AT4G06634.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.831 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C2H2 type) family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, C2H2-type/integrase, DNA-binding (InterPro:IPR013087); BEST Arabidopsis thaliana protein match is: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (TAIR:AT5G04240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:3764499..3766177 | ||||||||
| Molecular Weight (calculated) | 40086.30 Da | ||||||||
| IEP (calculated) | 5.93 | ||||||||
| GRAVY (calculated) | -1.20 | ||||||||
| Length | 349 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MLNCIIVLLL LPEDTFSRLK EKEKEPDVPE PEPEPTTEIL FLCSYDGCGK TFFDVSALRK HSHIHGERQY VCDQEGCGKK FLDSSKLKRH YLIHTGERNY 101: ICTYEGCGKA FSLDFNLRSH MKTHSQENYH ICPYSGCVKR YAHEYKLKNH VAAYHEKNGG GETPKYTPPA EKVLRTVKTP ATVCGPSSDR PYACPYEGCE 201: KAYIHEYKLK LHLKREHPGH LQEENADTPT LNKHNGNDRN EIDDGSDQDV YRKHASNGKG QTHKQQSRAK PNMRTPPAKV GKKGSTSSPA KARIAKKPWQ 301: AKETFEEVER EEEEDSEETE EDRDNVEDGW RFGENNEDDD DDEETEYED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)