AT4G01290.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:538213..543282 | ||||||||||||||||||||
| Molecular Weight (calculated) | 108500.00 Da | ||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||
| Length | 990 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSIANEQQF AMDQLVETND DSEKKPRITY TRKFLISLSE KDVCKKLPNL PGEFDEALLL DFEDPSPERA RISGDFSSHG FRRNDYSSSP PTRGELGTNS 101: RGTHGRWEGR SGGWNDKDSD SQSDRDSEPG RRSGMPSRRS WQAPEHDGLL GKGSFPKPSG FGAGTSAPRP QSNDSHQLSR TNEPYHPPRP YKAPPFTRRD 201: ARDSFNDETF GSSDSTSEDR AEEERKRRAS FELLRKEHQK AFQERQKSNP DLRKNDFDFT ELLGESKDDK GRPSRSDEVN HAPTIPGSSN TSLPSQSNAP 301: RPLVPPGFAS TILEKKQGEK PQTETSQYER SPLNSKGINV VNGTSVNNGG KPLGIKIGSS EMLIEGEDVR VSSTDANERA VNISSLLGIS TDTVNKDKSF 401: EKLSSISTPT EIQGYPIKSE KATMTLGKKK SLEHSDGPSI LDKIFNTAIN LNSGDSSNMN KKNVEKVEEI RSPQTINKSS KFAHLFLEED NKPVEVLPSS 501: EPPRGLLSLL QGADKLQTFD TKANPDLSTD FPFQGHATKR TDQLSSTSTT KSVTAVPPVL TCEDLEQSIL SEVGDSYHPP PPPVDQDTSV PSVKMTKQRK 601: TSVDDQASQH LLSLLQRSSD PKSQDTQLLS ATERRPPPPS MKTTTPPPSV KSTTAGEADP GKSLTLENLF GSAFMNELQS IGEPVSGRAM VSDAPGVPLR 701: SERSIGELSQ RNQIRPDGPP GGVLALPEDG NLLAVGGHAN PSKYMSFPGS HNQEPEVAFN ISDKLAALNS GPRNERPTMG GQDGLFLHQH PQQYVTNPSS 801: HLNGSGPVFH PFDSQHAHVK PQLDFMGPGS TMSQHHDPPP NHRFPPNMIH RPPFHHTPTS GHPEFDRLPP HMMQKMHMQD NLQHHHLMQG FPGSGPQPHH 901: SPHVNNQMPG LIPELNPSQG FPFAHRQPNY GMPPPGSQVN RGEHPASLQT LLGIQQRMDP AKQIPAVGQA GGPNRQGSVG HELDLGFGYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)