AT4G01290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1744 Blast hits to 1308 proteins in 219 species: Archae - 0; Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:538213..543282 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 108557.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSIANEQQF AMDQLVETND DSEKKPRITY TRKFLISLSE KDVCKKLPNL PGEFDEALLL DFEDPSPERA RISGDFSSHG FRRNDYSSSP PTRGELGTNS 101: RGTHGRWEGR SGGWNDKDSD SQSDRDSGEP GRRSGMPSRR SWQAPEHDGL LGKGSFPKPS GFGAGTSAPR PQSNDSHQLS RTNEPYHPPR PYKAPPFTRR 201: DARDSFNDET FGSSDSTSED RAEEERKRRA SFELLRKEHQ KAFQERQKSN PDLRKNDFDF TELLGESKDD KGRPSRSDEV NHAPTIPGSS NTSLPSQSNA 301: PRPLVPPGFA STILEKKQGE KPQTETSQYE RSPLNSKGIN VVNGTSVNNG GKPLGIKIGS SEMLIEGEDV RVSSTDANER AVNISSLLGI STDTVNKDKS 401: FEKLSSISTP TEIQGYPIKS EKATMTLGKK KSLEHSDGPS ILDKIFNTAI NLNSGDSSNM NKKNVEKVEE IRSPQTINKS SKFAHLFLEE DNKPVEVLPS 501: SEPPRGLLSL LQGADKLQTF DTKANPDLST DFPFQGHATK RTDQLSSTST TKSVTAVPPV LTCEDLEQSI LSEVGDSYHP PPPPVDQDTS VPSVKMTKQR 601: KTSVDDQASQ HLLSLLQRSS DPKSQDTQLL SATERRPPPP SMKTTTPPPS VKSTTAGEAD PGKSLTLENL FGSAFMNELQ SIGEPVSGRA MVSDAPGVPL 701: RSERSIGELS QRNQIRPDGP PGGVLALPED GNLLAVGGHA NPSKYMSFPG SHNQEPEVAF NISDKLAALN SGPRNERPTM GGQDGLFLHQ HPQQYVTNPS 801: SHLNGSGPVF HPFDSQHAHV KPQLDFMGPG STMSQHHDPP PNHRFPPNMI HRPPFHHTPT SGHPEFDRLP PHMMQKMHMQ DNLQHHHLMQ GFPGSGPQPH 901: HSPHVNNQMP GLIPELNPSQ GFPFAHRQPN YGMPPPGSQV NRGEHPASLQ TLLGIQQRMD PAKQIPAVGQ AGGPNRQGSV GHELDLGFGY R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)