AT3G54670.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.807 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Structural maintenance of chromosomes (SMC) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20235818..20243701 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143417.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1239 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPAIQSPSGK ILQLEMENFK SYKGHQLVGP FKDFTAIIGP NGSGKSNLMD AISFVLGVRT GQLRGSQLKD LIYAFDDRDK EQRGRKAFVR LVYQMDDGVE 0101: LRFTRSITSA GGSEYRIDNR VVNLDEYNGK LRSLGILVKA RNFLVFQGDV ESIASKNPKE LTGLLEEISG SEELKKEYEG LEEKKASAEE KAALIYQKKK 0201: TIGNEKKLKK AQKEEAEKHL RLQEELKALK RERFLWQLYN IENDIEKANE DVDSEKSNRK DVMRELEKFE REAGKRKVEQ AKYLKEIAQR EKKIAEKSSK 0301: LGKIQQPELL RFKEEIARIK AKIETNRKDV DKRKKEKGKH SKEIEQMQKS IKELNKKMEL FNKKRQDSSG KLPMLDSQLQ DYFRLKEEAG MKTIKLRDEH 0401: EVLERQRRTD LEALRNLEEN YQQLINRKND LDEQIKRFKD RQGEIETSSS KYKNETTSLK TELRALQEKH VNAREASAKL KTRIAELEDQ LSDLTAERYE 0501: NERDSRLTQA VESLKRLFQG VHGRMTDLCR PNRKKYNLAV TVAMGRFMDA VVVEDENTGK DCIKYLKEQR LPPMTFIPLQ SVRVKQVFER LRNLGGTAKL 0601: VFDVIQYPLH ISEVSKIYIF VLNYSTFDPE LEKAVLYAVG NTLVCDELEE AKVLSWSGER FKVVTVDGIL LTKAGTMTGG TSGGMEAKSN KWDDKKIEGL 0701: KKNKEDFEQQ LENIGSIREM QMKESEISGK ISGLEKKIQY AEIEKKSIKD KLPQLEQEER NIIEEIDRIK PELSKARTEV DKRKTEMNKL EKRMNEIVDR 0801: IYKDFSQSVG VPNIRVYEET QLKTAEKEAE ERLELSNQLA KLKYQLEYEQ NRDVGSRIRK IESSISSLET DLEGIQKTMS ERKETAVKIT NEINNWKKEM 0901: EECKQKSEEY EKEILDWKKQ ASQATTSITK LNRQIHSKET QIEQLISQKQ EITEKCELEH ITLPVLSDAM EEDDSDGPQF DFSELGRAYL QERRPSAREK 1001: VEAEFRQKIE SKTSEIERTA PNLRALDQYE AIQEKEKQVS QEFEAARKEE KQVADAFNTV KQKRYELFME AFNHIASNID KIYKQLTKSN THPLGGTAYL 1101: NLENEDDPFL HGIKYTTMPP TKRFRDMEQL SGGEKTVAAL ALLFSIHSYR PSPFFILDEV DAALDNLNVA KVAKFIRSKS CQAARDNQDA EDGNGFQSIV 1201: ISLKDSFYDK AEALVGVYRD TERSCSSTMS FDLRNYQES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)