AT3G54670.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.947 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Structural maintenance of chromosomes (SMC) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TITAN8 (TTN8); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20240428..20243701 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52442.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNKLEKRMNE IVDRIYKDFS QSVGVPNIRV YEETQLKTAE KEAEERLELS NQLAKLKYQL EYEQNRDVGS RIRKIESSIS SLETDLEGIQ KTMSERKETA 101: VKITNEINNW KKEMEECKQK SEEYEKEILD WKKQASQATT SITKLNRQIH SKETQIEQLI SQKQEITEKC ELEHITLPVL SDAMEEDDSD GPQFDFSELG 201: RAYLQERRPS AREKVEAEFR QKIESKTSEI ERTAPNLRAL DQYEAIQEKE KQVSQEFEAA RKEEKQVADA FNTVKQKRYE LFMEAFNHIA SNIDKIYKQL 301: TKSNTHPLGG TAYLNLENED DPFLHGIKYT TMPPTKRFRD MEQLSGGEKT VAALALLFSI HSYRPSPFFI LDEVDAALDN LNVAKVAKFI RSKSCQAARD 401: NQDAEDGNGF QSIVISLKDS FYDKAEALVG VYRDTERSCS STMSFDLRNY QES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)