AT3G52030.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.572 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein with WD40/YVTN repeat doamin | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein with WD40/YVTN repeat doamin; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), F-box domain, Skp2-like (InterPro:IPR022364), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19301872..19304227 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48577.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRTETGDES SARKMRRKVP TSIESLDADI LCIIFSFLDL FDLVHCTVVC NSWNAVIKRL KLLQASCRKM HHLGSDSPSS STSLDRPAEI DVEDFAMKHH 101: KMALLRGRIE IERWEAHSHR VSQCRMKKGL LLTGVGDKVM RLWSLKSYKC MEEYSLPDAS SLIDFDFDES KIVGLVGTRI SIWRRNGQRS IFPSRAGTFP 201: KGLCMRYIDP EAVVGCEDGT ARVFDMYSKT CSQIIRTQGG PITCLSLSDN QLFLSGSSLG RVTVSDPLMD QPVATLKSTI TAGGIQTICF NQGTNLAFIG 301: TTGGYVSCWD LRKMDRLWEK RVSPNVVYSI QQLRNDTSVM VAGGIDGVLR MIDQKSGRVL SRVIMDDKFS TTSTRNNQVV IEKRRGKRVS QDMEIDKIER 401: KVRPQISCIA MGMKKMVTAH NGKCISVWKF NLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)