AT3G46450.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.795 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14-like 3 (TAIR:AT2G21540.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17093297..17095319 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56289.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDNSGRSRN SMMATVSSGK ELLPKRSLVA AIPRAVQQTI SKHVSFGSNG RFGSGTARNA AVFLLKIAVL EVVRRVSKAK CPHLWNSLQA LQCLCYPPLK 101: WIQRWAPFKE LINAMQLLCV IVMQMLSRPL LVITIAEALT DQSELKQEAS GGTNSHASSE SESQSDSQTL QSPSDIRIED EAPLPVISQD WLRKLYEELE 201: KQRLSLPERL NEDELHRFYR VSNGDFTSLL SSIKKTIHWR ETYRILSEEE LETWSSLLFW HGYDKNQRPC LIVRLGLAFL KLPSHERPRF AQAIISQVEH 301: GVLHLLTPEN SELTVLVDCE GLSPLRIPMQ MMRSCSSILQ DHFPNRLGCL FIIRLPPVVR VISQTFIQIL RPTTRKKLRI EGETFHRVLS EYLQTLPSYL 401: GSNCNCKRCS NLNEQDPPQP QTHPRRKRRS SSETEKLDDS HWSYNAQTPD LSYEDEPSLN ICSQVLRTAV VFLLMIWLFG ALLAGFADPE SRPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)