AT3G46110.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF966) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031043 (InterPro:IPR021182), Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16932244..16933359 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 35433.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.71 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||
| Length | 311 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALVSSRATQ DSKPSRERIV PVVYYLSRNG RLDHPHFIEV PLSSHNGLYL KDVINRLNDL RGNGMACLYS WSSKRTYKNG FVWYDLSDED FIFPVHGQEY 101: VLKGSQILDL DNNSGNFSAV THRRNQSWSS VDHYKVYKAS ELNAEATRKL SMDASTQTDD RRRRKSPVDE VNEVTELSRE EITSPPQSDS SPETLESLMR 201: ADGRLILLQE DQELNRTVEK MRPSAVLMQL ISCGAMSFKK CGPTLMNGNT RSTAVRGTGN YRLERAEKEL KSFGRVKLEE KEYFSGSLID ESSKKELVPA 301: LKRSSSYNID R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)