AT3G43300.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.791 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HOPM interactor 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HOPM interactor 7 (ATMIN7); CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:15234235..15245034 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 191462.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.39 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1727 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAGGFLTRA FDTMLKESGG KKFPDLQKAI QAYQDGSKVV TQAAPSSIVE SSQAEGGGEK TGVEADEPQK VTSAEVAQQA SQSKSETINV SLANAGHTLG 0101: GAEVELVLKP LRLAFETKNL KIFDAALDCL HKLIAYDHLE GDPGLDGGKN SAPFTDILNM VCSCVDNSSP DSTVLQVLKV LLTAVASGKF KVHGEPLLGV 0201: IRVCYNIALN SKSPINQATS KAMLTQMISI VFRRMETDIV SASSTVSQEE HVSGDTSSPK NEEITAADEN EKEMTLGDAL TQAKDTTLAS VEELHTLVGG 0301: ADIKGLEAAL DKAVHLEDGK KIKRGIELES MSIGQRDALL VFRTLCKMGM KEDSDEVTTK TRILSLELLQ GMLEGVSHSF TKNFHFIDSV KAYLSYALLR 0401: ASVSQSSVIF QYASGIFSVL LLRFRDSLKG EIGIFFPIIV LRSLDNSECP NDQKMGVLRM LEKVCKDPQM LVDVYVNYDC DLEAPNLFER MVTTLSKIAQ 0501: GSQSADPNPA MASQTASVKG SSLQCLVNVL KSLVDWEKIR REAENSTRNA NEDSASTGEP IETKSREDVP SNFEKAKAHK STMEAAISEF NRNSVKGVEY 0601: LIANKLVERN PASVAQFLRS TSSLSKVMIG DYLGQHEEFP LAVMHAYVDS MKFSEMKFHS AIREFLKGFR LPGEAQKIDR IMEKFAERYC ADNPGLFKNA 0701: DTAYVLAYAV IMLNTDAHNP MVWPKMSKSD FTRMNATNDP EDCAPTELLE EIYDSIVQEE IKLKDDDTMK KLSSQRPGGE ERGGLVSILN LGLPKRISAA 0801: DAKSETEDIV RKTQEIFRKH GVKRGVFHTV EQVDIIRPMV EAVGWPLLAA FSVTMEVGDN KPRILLCMEG FKAGIHIAYV LGMDTMRYAF LTSLVRFTFL 0901: HAPKEMRSKN VEALRILLGL CDSEPDTLQD TWNAVLECVS RLEFIISTPG IAATVMHGSN QISRDGVVQS LKELAGRPAE QVFVNSVKLP SESVVEFFTA 1001: LCGVSAEELK QSPARVFSLQ KLVEISYYNI ARIRMVWARI WSVLAEHFVS AGSHHDEKIA MYAIDSLRQL GMKYLERAEL TNFTFQNDIL KPFVIIMRNT 1101: QSQTIRSLIV DCIVQMIKSK VGSIKSGWRS VFMIFTAAAD DEVESIVEKS FENVEQGDKQ SIKLLHLFAN NKASDRISLK AIALLRICED RLAEGLIPGG 1201: VLKPVDGNED ETFDVTEHYW FPMLAGLSDL TSDYRPEVRN CALEVLFDLL NERGNKFSTP FWESIFHRIL FPIFDHVSHA GKESLISSGD VKFRETSIHS 1301: LQLLCNLFNT FYKEVCFMLP PLLSLLLDCA KKSDQTVVSI SLGALVHLIE VGGHQFSEGD WDMLLKSIRD ASYTTQPLEL LNALSFDNPK KNLVLAGDIE 1401: ADASDSPRVD RNPDDIKDNG KVSAQASPRI GTHGTSLESG IPPKADGSEG RPSSSGRAQK DVDDVNLQRS QTFGQRFMDN LFLRNLTSQP KSSVAEVTVP 1501: SSPYKHEDPT EPDSREEESP ALGAIRGKCI TQLLLLGAIN SIQQKYWSNL KTPQKIAIMD ILFSFIEFAS SYNSYSNLRT RMNHIPTERP PLNLLRQELE 1601: GTTIYLDVLQ KTTSGLADDA SNSEDRLEGA AEEKLVSFCE QVLKETSDLQ STLGETTNMD VHRVLELRSP VIVKVLEGMC FMNNTIFRKH MREFYPLLTR 1701: LVCCEQMEIR GALANLFKAQ LKPLLQQ |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)