AT3G17040.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : high chlorophyll fluorescent 107 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5809378..5812605 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69831.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||
| Length | 618 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHFFFVPNSS SSSPSPANTS SFSLSFLTPQ IPENLFVDRS SSGVFSPQKE SANGEGEESN TEEGVLVVRR PLLENSDKES SEEEGKKYPA RIDAGLSNIA 101: KKMPIFEPER SESSSSSSAA AAARAQERPL AVNLDLSLYK AKVLARNFRY KDAEKILEKC IAYWPEDGRP YVALGKILSK QSKLAEARIL YEKGCQSTQG 201: ENSYIWQCWA VLENRLGNVR RARELFDAAT VADKKHVAAW HGWANLEIKQ GNISKARNLL AKGLKFCGRN EYIYQTLALL EAKAGRYEQA RYLFKQATIC 301: NSRSCASWLA WAQLEIQQER YPAARKLFEK AVQASPKNRF AWHVWGVFEA GVGNVERGRK LLKIGHALNP RDPVLLQSLG LLEYKHSSAN LARALLRRAS 401: ELDPRHQPVW IAWGWMEWKE GNTTTARELY QRALSIDANT ESASRCLQAW GVLEQRAGNL SAARRLFRSS LNINSQSYVT WMTWAQLEED QGDTERAEEI 501: RNLYFQQRTE VVDDASWVTG FLDIIDPALD TVKRLLNFGQ NNDNNRLTTT LRNMNRTKDS QSNQQPESSA GREDIETGSG FNLDVFLRSK LSLDPLKLDV 601: NLDSKRLERF TRGRINGA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)