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AT3G15430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.747
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 18094 Blast hits to 5607 proteins in 419 species: Archae - 68; Bacteria - 2169; Metazoa - 6534; Fungi - 1176; Plants - 2879; Viruses - 4; Other Eukaryotes - 5264 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:AB022218EMBL:AC024081EMBL:AY150379EMBL:CP002686EnsemblPlants:AT3G15430
EnsemblPlants:AT3G15430.1EnsemblPlants:AT3G15430.2entrez:820782Gene3D:2.130.10.30GeneID:820782Gramene:AT3G15430.1Gramene:AT3G15430.2
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF209IntAct:Q9LDU3InterPro:IPR000408InterPro:IPR009091KEGG:ath:AT3G15430OMA:FTRINFP
Pfam:PF00415Pfam:PF13540Pfscan:PS50012PhylomeDB:Q9LDU3PRINTS:PR00633PROSITE:PS00626PROSITE:PS50012
Proteomes:UP000006548RefSeq:NP_566512.1RefSeq:NP_974323.1scanprosite:PS00626SMR:Q9LDU3STRING:3702.AT3G15430.1SUPFAM:SSF50985
TAIR:AT3G15430UniGene:At.24353UniProt:Q9LDU3
Coordinates (TAIR10) chr3:+:5209408..5211562
Molecular Weight (calculated) 53031.60 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.06
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)