AT3G06400.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chromatin-remodeling protein 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1941066..1946700 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122620.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1057 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE 0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL 0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI 0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF 0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP 0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA 0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF 0701: TEDAIQFKMD DSKGADFYDF DDDNKDENKL DFKKIVSDNW NDPPKRERKR NYSESEYFKQ TLRQGAPAKP KEPRIPRMPQ LHDFQFFNIQ RLTELYEKEV 0801: RYLMQTHQKN QLKDTIDVEE PEGGDPLTTE EVEEKEGLLE EGFSTWSRRD FNTFLRACEK YGRNDIKSIA SEMEGKTEEE VERYAKVFKE RYKELNDYDR 0901: IIKNIERGEA RISRKDEIMK AIGKKLDRYR NPWLELKIQY GQNKGKLYNE ECDRFMICMI HKLGYGNWDE LKAAFRTSSV FRFDWFVKSR TSQELARRCD 1001: TLIRLIEKEN QEFDERERQA RKEKKLAKSA TPSKRPLGRQ ASESPSSTKK RKHLSMR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)