AT3G05380.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DIRP ;Myb-like DNA-binding domain | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ALWAYS EARLY 2 (ALY2); CONTAINS InterPro DOMAIN/s: DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1540961..1546139 | ||||||||||||
| Molecular Weight (calculated) | 108674.00 Da | ||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||
| Length | 974 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVEALFNMNR AYLSLPEGTA SVAGLIAMMT DHYSVMEGSG SEGEGHDASE VPRKQQKRKR AKPQRSDSPE EVDIQQSIGS PDGCLTFLKQ ARANGTQRHA 101: TGKRTPRVPV QTSFMRDDRE GSTPPNKRAR KQFDANDDVA HFLALALTDA SRRGGSPKVS ESPNRRTELS DSSPIKSWGK MSRTRKSQSK HCGSSIFEEW 201: MESSRERKLD SDKDTTLLMD MERAGEMEAP RKGKRVYKKR VKVEEAECND SDDNGEACSA TQGLRSKSQR RKAAIEASRE KYSPRSPKKR DDKHTSGAFD 301: ALQALAELSA SMLPANLMES ELSAQLKEER TEYDMDEKSS TPEATSTSSH GEKANVEPDD SLLHAISSVE NANKRKSKPS RLVSTDCDDV PTGKLQPQTS 401: GSLRKRKPKV LGDEAPAEFS QNKSINKKEL PQDENNMKSL VKTKRAGQVP AQSKQMKTVK ALEESAITSD KKRPGMDIVA SPKQVSDSGP TSLSQKPPNR 501: RKKSLQKSLQ EKAKSSETTH KAARSSRSLS EQELLLKDKL ATSLSFPFAR RRCIFEWFYS AIDHPWFSKM EFVDYLNHVG LGHIPRLTRL EWSVIKSSLG 601: RPRRFSERFL HEEREKLKQY RESVRKHYTE LRTGAREGLP TDLARPLAVG NRVIAIHPKT REIHDGKILT VDHNKCNVLF DDLGVELVMD IDCMPLNPLE 701: YMPEGLRRQI DKCLSMKKEA QLSGNTNLGV SVLFPPCGLE NVSFSMNPPL NQGDMIAPIL HGKVSSNTSS PRQTNHSYIT TYNKAKEAEI QRAQALQHAL 801: DEKEMEPEML EIVKGSKTRA QAMVDAAIKA ASSVKEGEDV NTMIQEALEL VGKNQLLRSS MVKHHEHVNG SIEHHHNPSP SNGSEPVANN DLNSQDGSEK 901: NAQMPSELIT SCVATWLMIQ MCTERQYPPA DVAQLIDAAV TSLQPRCPQN LPIYREIQTC MGRIKTQIMS LVPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)