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AT2G47830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cation efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT3G58060.1); Has 9484 Blast hits to 9472 proteins in 2416 species: Archae - 234; Bacteria - 7791; Metazoa - 296; Fungi - 408; Plants - 276; Viruses - 0; Other Eukaryotes - 479 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0053eggNOG:KOG1485EMBL:AC005309EMBL:AY139998EMBL:BT006611EMBL:CP002685EnsemblPlants:AT2G47830
EnsemblPlants:AT2G47830.1entrez:819395Gene3D:1.20.1510.10Gene3D:3.30.70.1350GeneID:819395Genevisible:Q8L725GO:GO:0005774
GO:GO:0008324GO:GO:0016021hmmpanther:PTHR11562hmmpanther:PTHR11562:SF18HOGENOM:HOG000030754InParanoid:Q8L725InterPro:IPR002524
InterPro:IPR027469InterPro:IPR027470iPTMnet:Q8L725KEGG:ath:AT2G47830OMA:SEVFIHIPANTHER:PTHR11562PaxDb:Q8L725
Pfam:PF01545Pfam:PF16916Pfam:Q8L725PhylomeDB:Q8L725PIR:A84920PRIDE:Q8L725PRO:PR:Q8L725
ProteinModelPortal:Q8L725Proteomes:UP000006548RefSeq:NP_182304.2RefSeq:NP_850480.1SMR:Q8L725STRING:3702.AT2G47830.1SUPFAM:0054606
SUPFAM:SSF160240TAIR:AT2G47830TCDB:2.A.4.7.2TIGRfam:TIGR01297TIGRFAMs:TIGR01297UniGene:At.43449UniProt:Q8L725
Coordinates (TAIR10) chr2:-:19591094..19593973
Molecular Weight (calculated) 51029.60 Da
IEP (calculated) 7.62
GRAVY (calculated) 0.10
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIIRFQILN PTRICRSTIY YMSCRYLPSS SSSSSPLRVS SSSSQKPSFD FSRRWHFGHP DHHQQYQKPG EEGEKIFRLG LTADIGLSVA KALTGYLCGS
101: TAIIADAAHS VSDVVLSGVA LVSYRAANVP KDKEHPYGHG KFETLGALGI SAMLLATGSG IAWHALDLLS IALSAAPEVI HSGHHHGIDM NHPILALTVT
201: IASISIKEGL YWITKRAGEK QGSGLMMANA WHHRSDAISS LVALVGVGGS ILGVNFLDPL AGLVVSTMIV NAGLKTGHQS ILELVDAAIP AQQLEPIRQT
301: ILQVEGVKGC HRLRGRRAGS SLYLDVHIVV DPFSSVSVAH EVGEYVRRQI NLNHPEVSEV FIHIDPAFLQ FSCSTKDHDS ITKESNICQE IKHVEATVSD
401: IFSSQLSEKL TIKRITPHLL HSKILLQIVV AMPSTMSIQD VMIAAEHAEK EILKAAPNVA RVSIQLSLNS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)