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AT2G46430.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide gated channel 3
Curator
Summary (TAIR10)
cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance
Computational
Description (TAIR10)
cyclic nucleotide gated channel 3 (CNGC3); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 3204 Blast hits to 3078 proteins in 223 species: Archae - 0; Bacteria - 24; Metazoa - 1501; Fungi - 4; Plants - 972; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AC006526EMBL:AF107726EMBL:AY058167EMBL:CP002685EMBL:Y17911
EnsemblPlants:AT2G46430EnsemblPlants:AT2G46430.1EnsemblPlants:AT2G46430.2entrez:819251Gene3D:2.60.120.10GeneID:819251Genevisible:Q9SKD7
GO:GO:0005249GO:GO:0005886GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391GO:GO:0071805
Gramene:AT2G46430.1Gramene:AT2G46430.2hmmpanther:PTHR10217hmmpanther:PTHR10217:SF465HOGENOM:HOG000238338InParanoid:Q9SKD7InterPro:IPR000595
InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490KEGG:ath:AT2G46430KO:K05391ncoils:CoilOMA:FWYLISI
PaxDb:Q9SKD7Pfam:PF00520Pfam:Q9SKD7Pfscan:PS50042PhylomeDB:Q9SKD7PIR:G84902PRIDE:Q9SKD7
PRO:PR:Q9SKD7PROSITE:PS50042ProteinModelPortal:Q9SKD7Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916
RefSeq:NP_001118537.1RefSeq:NP_566075.1SMART:SM00100SMR:Q9SKD7STRING:3702.AT2G46430.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT2G46430tair10-symbols:ATCNGC3tair10-symbols:CNGC3tair10-symbols:CNGC3.CTCDB:1.A.1.5.8TMHMM:TMhelixUniGene:At.19641
UniGene:At.36508UniGene:At.67271UniProt:Q9SKD7
Coordinates (TAIR10) chr2:+:19058472..19061273
Molecular Weight (calculated) 81673.40 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.19
Length 706 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNPQRNKFV RFNGNDDEFS TKTTRPSVSS VMKTVRRSFE KGSEKIRTFK RPLSVHSNKN KENNKKKKIL RVMNPNDSYL QSWNKIFLLL SVVALAFDPL
101: FFYIPYVKPE RFCLNLDKKL QTIACVFRTF IDAFYVVHML FQFHTGFITP SSSGFGRGEL NEKHKDIALR YLGSYFLIDL LSILPIPQVV VLAIVPRMRR
201: PASLVAKELL KWVIFCQYVP RIARIYPLFK EVTRTSGLVT ETAWAGAALN LFLYMLASHV FGSFWYLISI ERKDRCWREA CAKIQNCTHA YLYCSPTGED
301: NRLFLNGSCP LIDPEEITNS TVFNFGIFAD ALQSGVVESR DFPKKFFYCF WWGLRNLSAL GQNLKTSAFE GEIIFAIVIC ISGLVLFALL IGNMQKYLQS
401: TTVRVEEMRV KRRDAEQWMS HRMLPDDLRK RIRKYEQYKW QETKGVEEEA LLSSLPKDLR KDIKRHLCLK LLKKVPWFQA MDDRLLDALC ARLKTVLYTE
501: KSYIVREGEP VEDMLFIMRG NLISTTTYGG RTGFFNSVDL VAGDFCGDLL TWALDPLSSQ FPISSRTVQA LTEVEGFLLS ADDLKFVATQ YRRLHSKQLR
601: HMFRFYSVQW QTWAACFIQA AWKRHCRRKL SKALREEEGK LHNTLQNDDS GGNKLNLGAA IYASRFASHA LRNLRANAAA RNSRFPHMLT LLPQKPADPE
701: FPMDET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)