AT2G45540.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.933 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WD-40 repeat family protein / beige-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18757881..18772229 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 328110.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 3001 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEDDDERKLP EADIANPLHN RIEAFDTTLQ GISSADRAFK DDDFEQVSLG DQEKAANESQ GDLQEPGSFS NSDHGRSSFG GTEVVTYQLS GTQEMYDLMP 0101: MDDVQSDRLS SPGPEREAAY SMQQSLSETS LDSVHHPESG YSPVHSPQKP KPKATVPNVS PELLHLVDSA IMGKPESLDK LKNVVCGIEN FGCGEESEAT 0201: AFLVVDSLIA TMGGVESFEE DEDSNPPSVM LNSRAAIVSG ELIPWLPGLG DNVNFMSPRT RMVRGLLVIL RSCTRNRAMC STAGLLGVLL RSVEAIISKD 0301: VDMKWNAAAI LLLCIQHLAG HSLSVDDLHR WLQVIKAAIT TAWSSPLMLA LEKAMSGKES RGPACTFEFD GESSGLLGPG ESRWPFTNGY AFATWIYIES 0401: FADTLNAATA AAAIAAAAAA KSGKTSAMSA AAAASALAGE GTAHMPRLFS FLSADNQGIE AYFHAQFLVV ESGSGKGRKS SLHFTHAFKP QCWYFIGLEH 0501: SCKQGLLGKA ESELRLYIDG SLYESRPFDF PRISKPLSFC CIGTNPPPTM AGLQRRRRQC PLFAEMGPVY IFKEPIGPER MARLASRGGD VLPCFGNGAG 0601: LPWLATNDYV RNKAEESSIL DADIGGYTHL LYHPCLLSGR FCPDASLSGA AGTLRRPAEV LGQVHVATRM KPVESFWALA YGGPMSLLPL TVSSVHKDSL 0701: EPCLGNLPLS LSTVTLAAPV FRIMSVAIQH PGNNEELCRT QGPEILARIL SYLLHSLASL DRKHDGVGEE ELVAAIVSLC QSQKINHVLK VQLFRTLLLD 0801: LKIWSLCNYG LQKKLLSSLQ DMVFTEATAM RDAEAIQLLL DGCRRCYWMI SEKDSETTFP LDGNTRQMGE LNALIDELLV IIELLMGAAS PSLAADDLRR 0901: LLGFIIDSPQ PNQVHCKFNA NASAVCSLLA LLLIKLVPLF RSQIMYMNSR KPSYNGLHGE MWVISRENGL TDCTRLCWLV VQPNAARAQM FAEVFITSGG 1001: IETLLVLLQR EAKTGEDNVL AMGRSGKRSS TDPSEKSPYN ESGSVKQLDS NPHDNEIGFD LPGPDGNSVE DDNVGSLNVP ESVRQEKEHG STPVVCDSDS 1101: VSISNSINTE RLSAEIGGIS LSISADSARN NVYNVDNSDA VVVGIIRLIG ALISSGHLTF DFDARSDVTS NILGSGLHEN GGTMFDDKVA LLLFALLKAF 1201: QAAPNRLMTD NVYTTLLGAS INASSTEDGL NFYDSGHRFE HSQLLLVLLR SLPSASKALQ SRALQDLLFL ACSHPENRSS LTTMEEWPEW ILEILISNYE 1301: KDAGKQSASV GSCEVEDMIH NFLIIMLEHS MRQKDGWKDI EATIHCAEWL SIVGGSSTGE QRIRREESLP IFKRRLFGGL LDFAARELQA QTQVIAAAAA 1401: GVAAEGLAPK DAKAGAENAA QLSVFLVENA IVILMLVEDH LRSQSKQTCA TNAVASPSPL KKRTSTLTAI GESSEISSSR ASLSSDSGKV PLDILASMAD 1501: SSGQISAVAM ERLTAASAAE PYESVSCAFV SYGSCAMDLA EGWKYRSRLW YGVGLPSKPS SLGGGGSGSD SWKSTLEKDA HGNWIELPLV KKSVSMLQAL 1601: LLDESGLGGG LGIGGGSGTG MGGMTALYQL LDSDQPFLCM LRMVLLSMRE EDYGEDNMLM RNLSSERSSG NSVTLDSGSQ MSMRQSRSAL LWSVLSPIIN 1701: MPISDSKRQR VLVTACVLYS EVWHAISRDR RPLRKQYIEA IVPPFIAVLR RWRPLLAGIH ELATADGMNP LVVDDRALAA DALPVEGALS MVTPEWAAAF 1801: ASPPAAMSLA MIAAGAAGWE APPPPTPSHL RRDSSMLERK TAKLQTFSSF QKPLEPPNNN APPRPRDKAA AKAAALAAAR DLERNAKIGS GRGLSAVAMA 1901: TSAQRRNIGD MERLQRWNTS EAMGVAWMEC LQPVDTKSVY GKDFNALSYK FIAVLVASFA LARNMQRSEI DRRMQDDIIA ANRLCLGSRA WRKLIRYLAE 2001: MRCFFGPFGD GICSPERVFW KLDSMESFSR MRQSIRRNYS GTDHHGAAAD YDDQTETKSD NGSKGSQSNP PVVAAEVILM EIAYEEDEHG EGDQLDVKGN 2101: AEEHKRDEGR ISGSHEHASR TSAGNSDPRT SNDLEMVRDS SVVAPGFVPS ELDERILLEL PTSMVRPLRV VKGTFQITTR RINFIVDNRE SQNLADHSDE 2201: SQSGDQEKDR SWPMSSLHQI YSRRYLLRRS ALELFMVDRS NFFFDFGNTE GRRNAYRAIV QARPPHLNNI YLATQRPEQL LRRTQLMERW ARWEISNFEY 2301: LMQLNTLAGR SYNDITQYPV FPWIISDNSS ESLDLSNPST FRDLSKPIGA LNPERLKKFQ ERYSSFEDPV IPKFHYGSHY SSAGAVLYYL ARVEPFTTLS 2401: IQLQGGKFDH ADRMFSDFPG TWNGVLEDMS DVKELVPELF YLPEVLTNEN SIDFGTTQLG EKLDAVKLPP WAKNPVDFVH KQRRALESEH VSAHLHEWID 2501: LIFGYKQRGK EAIMANNVFF YITYEGTVDI DKITDPVQQR ATQDQIAYFG QTPSQLLTVP HMKRMPLKDV LHMQTIFRNP KEIKPYTVQT PERCNLPASA 2601: IQASSDSVVI VDMNVPAARV AQHKWQPNTP DGQGTPFLFH HGKATTTSTS GSLMRMFKGP ASSGTGDWQF PQAQAFASSG IRSSSVIAIT SDGEIITGGH 2701: ADNSIKLVSS DGAKTLETAF GHCAPVTCLA LSPDNNFLVT GSRDSTVLLW RIHKAFTSRT SVSEPSTGSG APSSTSNTNL ANTLANKGKK CRLEGPIQVL 2801: RGHRRELVCC CVSSDQGVVV SSSESSDVLL HSIRKGRLIR RLVGVKADSL CISSDGVIMA WSSSEGSISV FTINGVLIAK AKFPLFCSVG CMEISMDGQN 2901: ALIGMNSCSN SDYSSSNDTS KDSKEIERLD VPSPSICFLN LYTLQVFHVL KLGQGQDITA LALNVDNTNL LVSTEDKQLI IFTDPALSLK VVDQMLKLGW 3001: E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)