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AT2G34070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 37
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 37 (TBL37); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 38 (TAIR:AT1G29050.1); Has 1344 Blast hits to 1324 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK3IeggNOG:ENOG410YAJTEMBL:AC002341EMBL:AY086504EMBL:CP002685EnsemblPlants:AT2G34070EnsemblPlants:AT2G34070.1
entrez:817968GeneID:817968Genevisible:O22960GO:GO:0005794GO:GO:0016021GO:GO:0016413GO:GO:0071554
Gramene:AT2G34070.1hmmpanther:PTHR32285hmmpanther:PTHR32285:SF15HOGENOM:HOG000238066InParanoid:O22960InterPro:IPR025846InterPro:IPR026057
InterPro:IPR029962InterPro:IPR029986KEGG:ath:AT2G34070OMA:THYMGREPANTHER:PTHR32285PANTHER:PTHR32285:SF15PaxDb:O22960
Pfam:O22960Pfam:PF13839Pfam:PF14416PhylomeDB:O22960PIR:A84752PRIDE:O22960PRO:PR:O22960
Proteomes:UP000006548RefSeq:NP_565779.1STRING:3702.AT2G34070.1TAIR:AT2G34070tair10-symbols:TBL37TMHMM:TMhelixUniGene:At.37861
UniProt:O22960
Coordinates (TAIR10) chr2:-:14387631..14390160
Molecular Weight (calculated) 43355.80 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.26
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFKLNSLFL LLSLLILTIL SGADQALAYV KKPHVSQRNK TALAAVAGRG GGKEMLKGRK QTSGCNLFQG RWVFDASYPF YDSSTCPFID GEFDCLKFGR
101: PDKQFLKYSW QPDSCTVPRF DGEAFLKKWR GKRVMFVGDS LSLNMWESLA CMIHSSVPNT KTTFLKRTPL SSLTFQEYDV TLFLYRTPYL VDISKESVGR
201: VLNLGAIEDG ADAWKNMDLL VFNSWHWWTH TGVQSQGWDF IRDGSSLMRD MDRLDAFNKG LTTWGQWVDQ NVNVSQTRVF FQGISPTHYM GREWNEPRKT
301: CNGQMQPLTG STYPGGSLPA ASIVSRVLST MRTPVYLLDI TTLSQLRKDA HPSTYGGDGG TDCSHWCLPG LPDTWNQLLY AALSM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)