AT2G16940.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.919 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Splicing factor, CC1-like | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Splicing factor, CC1-like; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Splicing factor, CC1-like (InterPro:IPR006509), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like (TAIR:AT5G09880.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7342869..7347052 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68973.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 610 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFDEYEYLE KTVENPHLEN EVGNGGGDEK VKSEGKERSR SSRHRGDKKK ERDEDEDGRR SKRSRSHHRS RSRDRERDRH RSSREHRDRD REKDVDKEER 101: NGKDRERDRD KDRDSKGRDH EKDRSRRSRS RSERHRSQER EKSLEIEPKE RETKDRDRDR RYTSELVIDF IIYVHWYCLL YNLMGHVPFK IIIVIEGTSR 201: ASCVYAYWRK RHKDKKEDKV EPEADPERDQ RTVFAYQIAL RATERDVYEF FSRAGKVRDV RIIMDRISRR SRGIGYVEFY DTMSVPMAIA LSGQPLLGQP 301: VMVKPSEAEK NLVQSTTAAA GAGGMLGPYS GGARRLYVGN LHINMSEDDL RKVFESFGSV ELVQVPRDET GLCKGFGFVQ FARLEDARNA LNLNGQLEIA 401: GRAIKVSAVT DQTEVPEAGQ TQTTGDLDDD DGGGLSLNAQ SRALLMQKLD RSGTASSTGL TTAASFNGGV STISSLAAPA LVQGSFPAVA GLAGSGIIPG 501: VIPAGFDPIG VPSECLLLKN MFDPSTETED DFDEDIKEDV KEECSKFGKL NHIFVDKNSV GFVYLRFENA QAAIGAQRAL HGRWFAGKMI TATYMTTEAY 601: EAKFPESKVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)