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AT2G02160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCCH-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101ZIeggNOG:KOG4791EMBL:AC005936EMBL:AY059770EMBL:AY099878EMBL:BT000894EMBL:CP002685
EnsemblPlants:AT2G02160EnsemblPlants:AT2G02160.1entrez:814747GeneID:814747Genevisible:Q9ZUM0GO:GO:0003677GO:GO:0046872
Gramene:AT2G02160.1hmmpanther:PTHR15725hmmpanther:PTHR15725:SF3HOGENOM:HOG000239634InParanoid:Q9ZUM0InterPro:IPR000571iPTMnet:Q9ZUM0
KEGG:ath:AT2G02160OMA:REAGQHEPaxDb:Q9ZUM0Pfam:PF15663Pfam:Q9ZUM0Pfscan:PS50103PhylomeDB:Q9ZUM0
PIR:F84433PRIDE:Q9ZUM0PRO:PR:Q9ZUM0PROSITE:PS50103ProteinModelPortal:Q9ZUM0Proteomes:UP000006548RefSeq:NP_027420.1
SMART:SM00356SMR:Q9ZUM0STRING:3702.AT2G02160.1SUPFAM:SSF90229TAIR:AT2G02160UniGene:At.22554UniGene:At.72504
UniProt:Q9ZUM0
Coordinates (TAIR10) chr2:-:553407..555899
Molecular Weight (calculated) 75835.50 Da
IEP (calculated) 4.86
GRAVY (calculated) -1.24
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MFAPATQPQQ QHEQKKQSET VSSAEEDALK WNTDCVYFLA SPLTCKKGPE CEYRHSEYAR MNPRDCYYWL NGNCLNPKCG FRHPPLEGLL GNQGGAPAVS
101: VQPIHATAQH PSVAKQPVPC LFFQKGMCMK GDMCSFLHTP NPAAYKKQHP VEAKPATDPQ CSKKPIENNT EEKKLPDVNL SKVVKGHTDI SAAPRVASTG
201: LRDSRSVEGY IPNHVGYEPV VQRKGPGFPS FTEGGHSTQL LQKYGSDDNN SFHNGKDADD VLRESSPGFD VLVDNEAGDS EYYHVEDRYG RRSQERGNSE
301: YDPDFSAIAD GDKEALREQR FDSYDRREDR GWGHRRVSSE REDRLDRRVY AEDERSENIL ESDLRYRLAK QRKGNGMRLS VGGHDYAAPD SSMDRGYRES
401: RRDTPRENSI SSSRLQGRIK LRERSNGEEG HHFDRRSERG RDRSELPSQG RLRDRIKGRL EENHSGNQER GFGAPWARRR EMEDERKSAP KSSREESKPE
501: PSLGKRKSFE EDHHSHKRSR DSFAAPLPFS EILKRKKAAA SGGSRNNNKD ETISKEEAGD EIKLITEEKT EVVSEPKAEV EEEGTVMEEE EIVGEEVYEG
601: NEDEQAYEGD ELNGEYYYEE GYEEEGGEYA YEEGEEVVYA AEEGEEEATE GGEGEGEEDI EKKTVEMLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)