AT1G70180.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sterile alpha motif (SAM) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6486 Blast hits to 4294 proteins in 377 species: Archae - 0; Bacteria - 358; Metazoa - 2617; Fungi - 961; Plants - 670; Viruses - 147; Other Eukaryotes - 1733 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26426768..26429097 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50713.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEGSRRSRV TITLGRSGQV VNRAASDIDD GYELPRVGTK RSVKERLGNP LDSSVYGGEE VVSKRQRGEA SFSGNDLQIS RNDLRFKLMQ KNAQRRAQSD 101: EGCTMDLREK LSRSEQPPRS LDTRPRMAEP RDRPLSSSRT ARGSSQMISS SSSHPAWALE DLRRRSPERF VDTSRGRSPP RNAGSFIGIP REPSPPRNGR 201: RMIGSARDRS PPRSDGRIIG SPRDISPPRD AGRRFGPPRD QSPPRNAGRV TGSPRDRSPP RNAGRRMGPP RDQSPPRSTR SFSSNSRALS PARNMGSYMS 301: SSQGFSPPRN PRSYMGSSRG SPPRSNIEDF HGRSRMLDNM RASPYPVRGV LNGQAPSSGA PFARPMLPPP VPNPHPLPPL SQLPPLGSIM QNSPFSVDEP 401: LSVDGFLNSI GLGKYSLAFK REEVDMTTIK QMKESDLKDL IIPMGPRKKI LQAIASLPTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)