suba logo
AT1G66070.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translation initiation factor eIF3 subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor eIF3 subunit; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor eIF3 subunit (InterPro:IPR013906); BEST Arabidopsis thaliana protein match is: Translation initiation factor eIF3 subunit (TAIR:AT5G37475.1); Has 512 Blast hits to 510 proteins in 194 species: Archae - 2; Bacteria - 36; Metazoa - 190; Fungi - 147; Plants - 83; Viruses - 1; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111U5GeggNOG:KOG4813EMBL:AC026480EMBL:AY063794EMBL:AY091290EMBL:CP002684EnsemblPlants:AT1G66070
EnsemblPlants:AT1G66070.1EnsemblPlants:AT1G66070.2entrez:842921Gene3D:1.10.246.60GeneID:842921GO:GO:0001731GO:GO:0003743
GO:GO:0005852GO:GO:0006446GO:GO:0016020GO:GO:0016282GO:GO:0033290Gramene:AT1G66070.1Gramene:AT1G66070.2
HAMAP:MF_03009hmmpanther:PTHR21681HOGENOM:HOG000238746IntAct:Q9C8D8InterPro:IPR013906InterPro:IPR023194KEGG:ath:AT1G66070
KO:K03245OMA:HYGLFLEPANTHER:PTHR21681Pfam:PF08597PhylomeDB:Q9C8D8PIR:C96685Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702RefSeq:NP_001185326.1RefSeq:NP_564865.1SMR:Q9C8D8
STRING:3702.AT1G66070.1TAIR:AT1G66070UniGene:At.17575UniProt:Q9C8D8
Coordinates (TAIR10) chr1:-:24596194..24597520
Molecular Weight (calculated) 25508.10 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.85
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDWEDEKIA PLPAKVELKS NWDDEDVDEN EIKDSWEDDD DEPAQPPVIN PAPEKAPKKA APKTVEKKGK AVEVPKEAPK EKPLDPIAEK LRQQRLVEEA
101: DYRATAELFG VKDDDKNLDM FIPKSESDFL EYAEMISHRI KPYEKSYHYI ALLKTIMRLS LTNMKAADVK DVASSITTIA NEKLKAEKEA AAGKKKGGKK
201: KQLIVDKAND DLVAGPYDAM DDFDFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)