AT1G61850.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phospholipases;galactolipases | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phospholipases;galactolipases; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22856317..22862225 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 145230.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1309 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSTCSSPSA VEDPELGFRI DLDWTAGDSE DQVALRLESQ LMVALPAPHD TVVVELKGIG DDDEGGLENV GLEMRVEKRR EPLRAVTLMK AVGSGQQYDG 0101: VGVLTRLMRS DMMPAAIPAP AIDVASSCGV HWKTVTSLSL SGCGLLVMPV EVTELPLLEK LCLEHNKLSV LPPEIGKLKN LKILRVDNNM LISVPVELRQ 0201: CVGLVELSLE HNKLVRPLLD FRAMAGLRIL RLFGNPLEFL PEILPLHQLR HLSLVNIRIV SDENLRSVNV QIETENTSYF GASRHKLSAF SPLIFRSSSC 0301: HHPLLASTLV KIMQDEGNRS VIGKDENAVR QLISMITSDN QHVVEQACVA LSSLARDVGV AMQLMKCDIM KPTETVLKSS SPDEVISVLQ VVVTLAFVSD 0401: SVSQKMLTKD MLKALKSLCA HKNPEVQRQA LLAVGNLAFC LENRRILITS ESLRELLMRL IVTPEPRVNK AAARALAILG ENEILRRSIK GRQVPKQGLR 0501: ILTMDGGGMK GLATVQILKE IEKGSGKPIH ELFDLICGTS TGGMLAIALG VKLMTLEQCE EIYKNLGKLV FAESVPKDNE AASWREKLDQ LYKSSSQSFR 0601: VVIHGSKHSA NEFERLLKEM CADEDGDLLI ESAVKNVPKV FVVSTLVSVM PAQPFIFRNY QYPVGTPEMS YAFSDHSGGS TLTSSTASDQ AGYYKQSAFM 0701: GSCKHQVWQA IRASSAAPYY LDDFSVDSYR WQDGAIVANN PTIFAIREAQ LLWPDTKIDC LVSIGSGSVP TRVRKGGWRY LDTGQVLIES ACSVERVEEA 0801: LSTLLPMLPE IQYFRFNPVD DRCGMELDET DPAIWLKLEA AIEEFIQSNP QVFKNVCERL TLPFLNDEKW CDNLKPRFMN GKLPNSRVES SPSLGWRRNV 0901: LLMEAQHSPD SGRVKYHARA LESFCSNNGI KLSSLHTTAT PGCQKPSPGT AFPTPFTSPL ITGSLPPSPL LFTPELGPQK FNRIDMVPPL SLDGGHVGKT 1001: VMSPPSSPPR QRQLYLPLRQ MHEKLQNLPQ VGILHLSLQN DSNGSILSWQ NDVFVVAEPG DLADKFLQSV KVSILSVMQS NRRKAASVLS NICSISDLVR 1101: SKKCFQVGNI IHRYIGRQTL VMEDDQEIAS FMFRRTVPSA HLTPDDIRWM VGAWRDRIIV FSGTFGPTQA VVKAFLDSGA KAVIGPSNEP QETPLITSQG 1201: SSEYNIGDQN GKFEIGEEED EDEEVNEETE REEMEPPTPT SDWEDSDHEK TNRDGKYCGL WEDDEEEVSE FVCQLYDQLF RENSRVDVAL QKALASHRKL 1301: RYTCHLPNV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)