AT1G55310.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : SC35-like splicing factor 33 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. | ||||||||||||
| Computational Description (TAIR10) |
SC35-like splicing factor 33 (SR33); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: interchromatin granule, nuclear speck, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 74071 Blast hits to 42895 proteins in 2604 species: Archae - 973; Bacteria - 11117; Metazoa - 35835; Fungi - 6236; Plants - 4620; Viruses - 230; Other Eukaryotes - 15060 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr1:+:20630676..20632567 | ||||||||||||
| Molecular Weight (calculated) | 25529.90 Da | ||||||||||||
| IEP (calculated) | 11.75 | ||||||||||||
| GRAVY (calculated) | -1.46 | ||||||||||||
| Length | 220 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY 101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG 201: RSLTPVRGKS RSLSPTQEEA |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)