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AT1G53160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squamosa promoter binding protein-like 4
Curator
Summary (TAIR10)
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Computational
Description (TAIR10)
squamosa promoter binding protein-like 4 (SPL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 5 (TAIR:AT3G15270.1); Has 846 Blast hits to 845 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 846; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26974eggNOG:ENOG410J055eggNOG:ENOG410YKCIEMBL:AC008007EMBL:AJ011630EMBL:AJ011631EMBL:AJ011632
EMBL:AY084902EMBL:BT002856EMBL:BT004391EMBL:CP002684EnsemblPlants:AT1G53160EnsemblPlants:AT1G53160.1EnsemblPlants:AT1G53160.2
entrez:841749EvolutionaryTrace:Q9S7A9Gene3D:4.10.1100.10GeneID:841749Genevisible:Q9S7A9GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0009908GO:GO:0010321GO:GO:0046872
Gramene:AT1G53160.1Gramene:AT1G53160.2hmmpanther:PTHR31251hmmpanther:PTHR31251:SF9HOGENOM:HOG000005763InParanoid:Q9S7A9InterPro:IPR004333
InterPro:IPR017238KEGG:ath:AT1G53160OMA:ERSRVEMPaxDb:Q9S7A9PDB:1UL4PDBsum:1UL4Pfam:PF03110
Pfam:Q9S7A9Pfscan:PS51141PhylomeDB:Q9S7A9PIR:T52599PIR:T52600PIRSF:PIRSF037575PRO:PR:Q9S7A9
PROSITE:PS51141ProteinModelPortal:Q9S7A9Proteomes:UP000006548RefSeq:NP_175723.1RefSeq:NP_974014.1SMR:Q9S7A9STRING:3702.AT1G53160.1
SUPFAM:SSF103612TAIR:AT1G53160tair10-symbols:SPL4UniGene:At.496UniProt:Q9S7A9
Coordinates (TAIR10) chr1:+:19806478..19807080
Molecular Weight (calculated) 20120.80 Da
IEP (calculated) 10.14
GRAVY (calculated) -1.20
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKRSQGQG YMKKKSYLVE EDMETDTDEE EEVGRDRVRG SRGSINRGGS LRLCQVDRCT ADMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR
101: FHDLQEFDEA KRSCRRRLAG HNERRRKSSG ESTYGEGSGR RGINGQVVMQ NQERSRVEMT LPMPNSSFKR PQIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)