AT1G51690.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
55 kDa B regulatory subunit of phosphatase 2A mRNA, | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (B ALPHA); FUNCTIONS IN: nucleotide binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system, protein phosphatase type 2A complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A, regulatory subunit PR55 (TAIR:AT1G17720.2). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19164124..19169974 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67498.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNQNIEEIKF ILLIVCLLVP SAATLLGVSK RIFQETALQL NCYQWMDNNA KNLCFVFSFN AQESKKTELS YPKERSVCES ERARDRERER EMNGGDEVVA 101: ASADPSLPLE WRFSQVFGER SAGEEVQEVD IISAIEFDNS GNHLATGDRG GRVVLFERTD TNNSSGTRRE LEEADYPLRH PEFRYKTEFQ SHDPEFDYLK 201: SLEIEEKINK IRWCQTANGA LFLLSTNDKT IKFWKVQDKK IKKICDMNSD PSRTVGNGTV ASSSNSNITN SCLVNGGVSE VNNSLCNDFS LPAGGISSLR 301: LPVVTSHESS PVARCRRVYA HAHDYHINSI SNNSDGETFI SADDLRINLW NLEISNQSFN IVDVKPAKME DLSEVITSAE FHPTHCNMLA YSSSKGSIRL 401: IDLRQSALCD SHSKLFEEPE QAGPKSFFTE IIASVSDIKF AKEGRYLLSR DYMTLKLWDI NMDAGPVATF QVHEYLKPKL CDLYENDSIF DKFECCISGN 501: GLRAATGSYS NLFRVFGVAP GSTETATLEA SRNPMRRHVP IPSRPSRALS SITRVVSRGS ESPGVDGNTN ALDYTTKLLH LAWHPNENSI ACAAANSLYM 601: YYA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)