AT1G51690.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.834 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform | ||||||||||||
| Curator Summary (TAIR10) |
55 kDa B regulatory subunit of phosphatase 2A mRNA, | ||||||||||||
| Computational Description (TAIR10) |
protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (B ALPHA); FUNCTIONS IN: nucleotide binding, protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A, regulatory subunit PR55 (TAIR:AT1G17720.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19166218..19169974 | ||||||||||||
| Molecular Weight (calculated) | 56838.40 Da | ||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||
| Length | 512 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGGDEVVAA SADPSLPLEW RFSQVFGERS AGEEVQEVDI ISAIEFDNSG NHLATGDRGG RVVLFERTDT NNSSGTRREL EEADYPLRHP EFRYKTEFQS 101: HDPEFDYLKS LEIEEKINKI RWCQTANGAL FLLSTNDKTI KFWKVQDKKI KKICDMNSDP SRTVGNGTVA SSSNSNITNS CLVNGGVSEV NNSLCNDFSL 201: PAGGISSLRL PVVTSHESSP VARCRRVYAH AHDYHINSIS NNSDGETFIS ADDLRINLWN LEISNQSFNI VDVKPAKMED LSEVITSAEF HPTHCNMLAY 301: SSSKGSIRLI DLRQSALCDS HSKLFEEPEQ AGPKSFFTEI IASVSDIKFA KEGRYLLSRD YMTLKLWDIN MDAGPVATFQ VHEYLKPKLC DLYENDSIFD 401: KFECCISGNG LRAATGSYSN LFRVFGVAPG STETATLEAS RNPMRRHVPI PSRPSRALSS ITRVVSRGSE SPGVDGNTNA LDYTTKLLHL AWHPNENSIA 501: CAAANSLYMY YA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)