AT1G44910.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pre-mRNA-processing protein 40A | ||||||||||||
| Curator Summary (TAIR10) |
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. | ||||||||||||
| Computational Description (TAIR10) |
pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16975930..16982647 | ||||||||||||
| Molecular Weight (calculated) | 105651.00 Da | ||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||
| GRAVY (calculated) | -1.10 | ||||||||||||
| Length | 926 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANNPPQSSG TQFRPMVPGQ QGQHFVPAAS QPFHPYGHVP PNVQSQPPQY SQPIQQQQLF PVRPGQPVHI TSSSQAVSVP YIQTNKILTS GSTQPQPNAP 101: PMTGFATSGP PFSSPYTFVP SSYPQQQPTS LVQPNSQMHV AGVPPAANTW PVPVNQSTSL VSPVQQTGQQ TPVAVSTDPG NLTPQSASDW QEHTSADGRK 201: YYYNKRTKQS NWEKPLELMT PLERADASTV WKEFTTPEGK KYYYNKVTKE SKWTIPEDLK LAREQAQLAS EKTSLSEAGS TPLSHHAASS SDLAVSTVTS 301: VVPSTSSALT GHSSSPIQAG LAVPVTRPPS VAPVTPTSGA ISDTEATTIK GDNLSSRGAD DSNDGATAQN NEAENKEMSV NGKANLSPAG DKANVEEPMV 401: YATKQEAKAA FKSLLESVNV HSDWTWEQTL KEIVHDKRYG ALRTLGERKQ AFNEYLGQRK KVEAEERRRR QKKAREEFVK MLEECEELSS SLKWSKAMSL 501: FENDQRFKAV DRPRDREDLF DNYIVELERK EREKAAEEHR QYMADYRKFL ETCDYIKAGT QWRKIQDRLE DDDRCSCLEK IDRLIGFEEY ILDLEKEEEE 601: LKRVEKEHVR RAERKNRDAF RTLLEEHVAA GILTAKTYWL DYCIELKDLP QYQAVASNTS GSTPKDLFED VTEELEKQYH EDKSYVKDAM KSRKISMVSS 701: WLFEDFKSAI SEDLSTQQIS DINLKLIYDD LVGRVKEKEE KEARKLQRLA EEFTNLLHTF KEITVASNWE DSKQLVEESQ EYRSIGDESV SQGLFEEYIT 801: SLQEKAKEKE RKRDEEKVRK EKERDEKEKR KDKDKERREK EREREKEKGK ERSKREESDG ETAMDVSEGH KDEKRKGKDR DRKHRRRHHN NSDEDVSSDR 901: DDRDESKKSS RKHGNDRKKS RKVGTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)