AT1G34380.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 5'-3' exonuclease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, SAM-fold domain (InterPro:IPR020047), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT3G52050.5); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12552839..12554299 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39502.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.42 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 347 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITVGFIQPN SLFSFSTKSI DKTQPSRTKW VSSSSSSFSS HSSVETFHRT GNVQVLQKDV LCGNNEEIRK KNKRVFFLDV SPLCYEGNKP SSQAFGHWIS 101: LFFSQVSLTD PVIAVIDGEE GNQRRRELLP SYKAHRKSPN HGRYSKRPHQ FVDEVLRKCN VPVVRIEGHE ADDVVATLME QAVQRGYRAV IASPDKDFKQ 201: LISENVQIVI PLADLRRWSF YTLKHYHAQY NCDPQSDLSF RCIMGDEVDG VPGIQHMVPA FGRKTAMKLV RKHGSLESLL SAAAVRTVGR PYAQEALTKY 301: ADYLRRNYQV LALNRDVRVQ IQNEWLMERD TSNDSEVLSS FFSTLHG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)